Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

4 accessions found for Chelativorans sp. BNC1  

Data for CP000389  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000389.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000389_0021 CDS_17977-19434 46.6 5.6e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000389_0021 1/1 260 318 .. 1 87 [] 46.6 5.6e-14

Alignments of top-scoring domains:
CP000389_0021: domain 1 of 1, from 260 to 318: score 46.6, E = 5.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++l ++sH+LRTPLt+Ir+ ae L +
CP000389_0 260 GRAQMLGAISHDLRTPLTTIRLRAESLGD------------------ 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++il ++e +++++ L ++r ++
CP000389_0 289 ----------SEVRHRILAAIEEMDAMLASTLAFAREGTA 318


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 3 0|==
-12 6 7|===*
-11 25 37|============= *
-10 61 69|=============================== *
-9 64 71|================================ *
-8 41 53|===================== *
-7 38 33|================*==
-6 22 19|=========*=
-5 19 10|====*=====
-4 17 5|==*======
-3 14 3|=*=====
-2 2 1|*
-1 3 0|==
> 0 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 38.7527
P(chi-square) = 5.463e-06

Total sequences searched: 317

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: