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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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39 projects found  

1 accessions found for Trichodesmium erythraeum IMS101  

Data for CP000393  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000393.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000393_0806 CDS_1483210-1487364 94.0 3e-26 1
CP000393_1230 CDS_2230655-2228505 92.2 9.5e-26 1
CP000393_3631 CDS_6405667-6407919 91.2 1.9e-25 1
CP000393_0529 CDS_997127-998314 88.6 1e-24 1
CP000393_1184 CDS_2148653-2146092 79.1 4.9e-22 1
CP000393_2982 CDS_5223199-5226822 77.5 1.4e-21 1
CP000393_0571 CDS_1082962-1086354 77.3 1.6e-21 1
CP000393_2383 CDS_4232294-4228935 73.6 1.8e-20 1
CP000393_2753 CDS_4816624-4813106 72.8 3e-20 2
CP000393_0570 CDS_1079303-1082704 72.0 5e-20 1
CP000393_3317 CDS_5847951-5844586 70.6 1.2e-19 1
CP000393_0464 CDS_860560-858851 70.6 1.3e-19 1
CP000393_1915 CDS_3455543-3453420 69.3 2.9e-19 1
CP000393_3306 CDS_5823462-5825531 66.6 1.7e-18 1
CP000393_2799 CDS_4908824-4907277 64.0 9.6e-18 1
CP000393_4175 CDS_7286588-7284210 51.3 3.7e-14 1
CP000393_1388 CDS_2508028-2508810 47.3 4.9e-13 1
CP000393_3904 CDS_6857684-6852048 42.4 1.2e-11 1
CP000393_3692 CDS_6512089-6513231 38.9 1.2e-10 1
CP000393_2227 CDS_3952464-3947029 36.4 6.3e-10 2
CP000393_3414 CDS_6046089-6044701 35.1 1.4e-09 1
CP000393_3532 CDS_6258428-6259666 34.9 1.6e-09 1
CP000393_2206 CDS_3911002-3909899 31.8 1.3e-08 1
CP000393_3663 CDS_6455375-6457474 31.2 1.8e-08 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000393_0806 1/1 667 732 .. 1 87 [] 94.0 3e-26
CP000393_1230 1/1 447 515 .. 1 87 [] 92.2 9.5e-26
CP000393_3631 1/1 269 335 .. 1 87 [] 91.2 1.9e-25
CP000393_0529 1/1 148 216 .. 1 87 [] 88.6 1e-24
CP000393_1184 1/1 477 551 .. 1 87 [] 79.1 4.9e-22
CP000393_2982 1/1 456 524 .. 1 87 [] 77.5 1.4e-21
CP000393_0571 1/1 452 520 .. 1 87 [] 77.3 1.6e-21
CP000393_2383 1/1 441 509 .. 1 87 [] 73.6 1.8e-20
CP000393_0570 1/1 445 513 .. 1 87 [] 72.0 5e-20
CP000393_3317 1/1 368 436 .. 1 87 [] 70.6 1.2e-19
CP000393_0464 1/1 323 391 .. 1 87 [] 70.6 1.3e-19
CP000393_2753 2/2 535 599 .. 1 87 [] 70.1 1.7e-19
CP000393_1915 1/1 445 512 .. 1 87 [] 69.3 2.9e-19
CP000393_3306 1/1 448 515 .. 1 87 [] 66.6 1.7e-18
CP000393_2799 1/1 219 286 .. 1 87 [] 64.0 9.6e-18
CP000393_4175 1/1 561 626 .. 1 87 [] 51.3 3.7e-14
CP000393_1388 1/1 21 88 .. 1 87 [] 47.3 4.9e-13
CP000393_3904 1/1 1053 1118 .. 1 87 [] 42.4 1.2e-11
CP000393_3692 1/1 158 226 .. 1 87 [] 38.9 1.2e-10
CP000393_3414 1/1 177 241 .. 1 87 [] 35.1 1.4e-09
CP000393_3532 1/1 180 248 .. 1 80 [. 34.9 1.6e-09
CP000393_2206 1/1 150 215 .. 1 87 [] 31.8 1.3e-08
CP000393_2227 1/2 1551 1584 .. 1 41 [. 27.2 2.4e-07

Alignments of top-scoring domains:
CP000393_0806: domain 1 of 1, from 667 to 732: score 94.0, E = 3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP++a++g++ lLl+ t l ++q
CP000393_0 667 AKSEFLATMSHEIRTPINAVIGMTGLLLD---------TSLKSDQ-- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++eti+++++ ll Lind+Ld+s+ie++
CP000393_0 703 ----------TEFVETIRSSGDALLTLINDILDFSKIESE 732

CP000393_1230: domain 1 of 1, from 447 to 515: score 92.2, E = 9.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f++n+sHELRTPL I+ ++e+L e++ ++lse +r
CP000393_1 447 AKSQFISNVSHELRTPLFNIKSFIETLHEYG-------EDLSEVER- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+let+ +e++rl rL+nd+Ldlsr+e+
CP000393_1 486 ----------REFLETANHETDRLTRLVNDVLDLSRLESC 515

CP000393_3631: domain 1 of 1, from 269 to 335: score 91.2, E = 1.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL++I+gy+e+L + +++++e++
CP000393_3 269 AKSEFLANMSHELRTPLNGILGYTEILSR--------SEAWGEKE-- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i++++ +ll Lind+Ld+s+iea
CP000393_3 306 ----------KKGIDIIHQCGSHLLTLINDILDISKIEAR 335

CP000393_0529: domain 1 of 1, from 148 to 216: score 88.6, E = 1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI+gy+e+Lle++ + l++++
CP000393_0 148 AKSVFLANMSHELRTPLNAIIGYSEILLEDA-------HSLGSKD-- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i+ ++++ll +ind+Ldls+ieag
CP000393_0 186 ---------FIHDINNIHTSGKHLLTIINDILDLSKIEAG 216

CP000393_1184: domain 1 of 1, from 477 to 551: score 79.1, E = 4.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTPLt ++g +++Ll +++ +++++++++
CP000393_1 477 AKSEFLATMSHELRTPLTCVIGISSTLLQWSY------GNRGAKKMP 517

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl++i++++e+ll+Lind+Ldls+ eag
CP000393_1 518 IQKQ------RDYLKIIHDSGEHLLELINDILDLSQVEAG 551

CP000393_2982: domain 1 of 1, from 456 to 524: score 77.5, E = 1.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan sHELRTPL++I+g a+ +++++ ++ se q
CP000393_2 456 LKDEFLANTSHELRTPLNGIIGIADSIRDGAT------GPISELQ-- 494

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i +++rl +L+nd+Ld+s++++
CP000393_2 495 ----------KKNLSMIVGSGHRLANLVNDILDFSKLRHC 524

CP000393_0571: domain 1 of 1, from 452 to 520: score 77.3, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan sHELRTPL++I+g ae + +++ ++ se q
CP000393_0 452 LKDEFLANTSHELRTPLNGIIGIAESMMDGAT------GNISELQ-- 490

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i +++rl +L+nd+Ld+s++++
CP000393_0 491 ----------NKNLSMIVVSGHRLANLVNDILDFSKLRHH 520

CP000393_2383: domain 1 of 1, from 441 to 509: score 73.6, E = 1.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan sHELRTPL++I+g +e L +++ +els+e
CP000393_2 441 LKDEFLANTSHELRTPLNGIIGITESLIDGVA------GELSSEV-- 479

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++ +++rl++Lind+Ld+ ++ +
CP000393_2 480 ----------KNNLYLVIFSGKRLSNLINDILDFYKLKHR 509

CP000393_0570: domain 1 of 1, from 445 to 513: score 72.0, E = 5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan sHELRTPL++I+g e Lle +l++ +
CP000393_0 445 LKDEFLANTSHELRTPLNGIIGIGEFLLE------ENTKNLNSIT-- 483

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i ++a+rl++L+nd+Ld+s+i+
CP000393_0 484 ----------TSNLAIIVSSARRLSNLVNDILDFSKIRYH 513

CP000393_3317: domain 1 of 1, from 368 to 436: score 70.6, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla +sHEL+TPLta++g+++lL++ + ++l+ q
CP000393_3 368 LKDEFLACISHELKTPLTAVLGLSSLLKD------QTLGALNKRQ-- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y i++++++l + ind+Ldl+r+e+g
CP000393_3 407 ----------THYATLIHQSGRHLMAVINDILDLTRMETG 436

CP000393_0464: domain 1 of 1, from 323 to 391: score 70.6, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL+aI+gy+++L e++ e + ++
CP000393_0 323 SKSAFLATMSHELRTPLNAIIGYSDILYEDV-------LEGGYKD-- 360

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e+i+ +++ ll++i+d+Ld+s+ieag
CP000393_0 361 ---------FIPDIERIKLAGKNLLEMISDILDISKIEAG 391

CP000393_2753: domain 2 of 2, from 535 to 599: score 70.1, E = 1.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+ n+sHE+RTPLt ++g++e + +++ ++l+ e
CP000393_2 535 LKTEFFQNISHEFRTPLTLMIGLLEEAVNYQ-------QDLPLES-- 572

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++lr ++rllrL+n+lLdl r++ag
CP000393_2 573 -------------SAIALRNSRRLLRLVNQLLDLQRLDAG 599

CP000393_1915: domain 1 of 1, from 445 to 512: score 69.3, E = 2.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+g ++++ +++ +++ ee
CP000393_1 445 LKSEFLANISHELRTPLNGIIGSLQIIYDGFC------DTREEEI-- 483

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ + ++a +llr+i+d+Ld+ +i+a
CP000393_1 484 -----------QFLKQANDSAIHLLRIIDDILDIRKIDAR 512

CP000393_3306: domain 1 of 1, from 448 to 515: score 66.6, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s ++a HELRTPL++I+ +e L +++++ee r
CP000393_3 448 TRSNLIAITGHELRTPLSTIQVCLESLSQ--------EPDMPEELR- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +let+l +a+r+++Li+d+L+ls +e+g
CP000393_3 486 ----------QVMLETALGDANRMRNLIQDFLTLSHLESG 515

CP000393_2799: domain 1 of 1, from 219 to 286: score 64.0, E = 9.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a++sHELR+P++ I+++++++l+ d++l + ++
CP000393_2 219 HLKKFTADASHELRNPIAMIQTNVQVALA--------DPKLVSSEH- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r ++rl rL++dlL l+r ++
CP000393_2 257 ----------QQQLQVIERLTRRLGRLVDDLLFLARQDSR 286

CP000393_4175: domain 1 of 1, from 561 to 626: score 51.3, E = 3.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl+++sHELRTPL+ +++++++L+ + se+
CP000393_4 561 LKDDFLSTVSHELRTPLSNMKMAIHMLKV---------FPISEKG-- 596

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++++ e +r +Li dlLdl +e
CP000393_4 597 ----------QKYLNILDTECKREIELITDLLDLQHLEVS 626

CP000393_1388: domain 1 of 1, from 21 to 88: score 47.3, E = 4.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k fla +HELR P+++++ ++l+ +l ++ +ee+
CP000393_1 21 FKAGFLARTAHELRSPINSMISGLQLIISDL-------ADNPEEE-- 58

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ ++++a l L++++ s+ e+g
CP000393_1 59 ----------RQFVNEAYNCALKTLGLLDEIIYVSKTEHG 88

CP000393_3904: domain 1 of 1, from 1053 to 1118: score 42.4, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+la++sH T ++ ++++++lLl +l+++q
CP000393_3 1053 AQGELLAMMSHKSQTNMNDVMMMTSLLLS---------MKLNPKQ-- 1088

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++til ++ ++in++Ld+++i +g
CP000393_3 1089 ----------RDFVKTILARGDVVINMINNILDFTKIKSG 1118

CP000393_3692: domain 1 of 1, from 158 to 226: score 38.9, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +sH+L PL + +++++L ++ + l+e+
CP000393_3 158 ELENFAYLASHDLQEPLRMVTTFTQMLGQRYK------DQLDEDA-- 196

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + + a r+++LindlL +sr + +
CP000393_3 197 ----------NQIIDFAVDGAIRMQSLINDLLLYSRVGRQ 226

CP000393_3414: domain 1 of 1, from 177 to 241: score 35.1, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + n+ H+L+ PLta+r++ +lLl+ l+e+++
CP000393_3 177 QQFDTMHNILHQLKSPLTALRTFGKLLLK---------KFLPEDKN- 213

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ilre++rl++Li+++ + +ag
CP000393_3 214 ----------WNITNSILRESDRLRELIEQI--DETVDAG 241

CP000393_3532: domain 1 of 1, from 180 to 248: score 34.9, E = 1.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++ +a+l+H+LR+PLta+++++e+L+ ++++++ + +
CP000393_3 180 FKDRIIAMLAHDLRNPLTALSLALETLES-----TQKRANNESVKSS 221

peLRledpeyreyletilreaerllrLindlLd<-*
p ++++++ ++ +++ ++r+i d+L+
CP000393_3 222 PTF------FERLIKQARYQVRMIDRMITDILE 248

CP000393_2206: domain 1 of 1, from 150 to 215: score 31.8, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++ ++ H++R P t+I++ +++L+e + + e
CP000393_2 150 LIGEMVNTIIHDFRSPFTGIQLSSSMLKE---------LHPDQES-- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + i +++r+l++ +++L +s+ +
CP000393_2 186 ----------QEWCDLISMQVQRMLNMAEEVLAFSQGNTK 215

CP000393_2227: domain 1 of 2, from 1551 to 1584: score 27.2, E = 2.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtel<-*
+++e++a+++HE+++P+t I+g++ ++e++ ++l
CP000393_2 1551 SLGEMVAGIAHEINNPITFISGNIFHAQEYF-------GDL 1584


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 27 0|==
-13 85 3|*======
-12 270 101|=======*============
-11 521 527|=====================================*
-10 782 978|======================================================== *
-9 820 1010|==========================================================*
-8 670 756|================================================ *
-7 494 476|=================================*==
-6 328 274|===================*====
-5 168 150|==========*=
-4 96 80|=====*=
-3 68 42|==*==
-2 36 22|=*=
-1 22 11|*=
0 22 6|*=
1 6 3|*
2 2 1|*
3 0 0|
4 1 0|=
5 1 0|=
6 0 0|
7 0 0|
8 1 0|=
> 9 31 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 454.2180
P(chi-square) = 0

Total sequences searched: 4451

Whole sequence top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: