Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Granulibacter bethesdensis CGDNIH1  

Data for CP000394  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000394.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000394_0757 CDS_872946-874718 119.9 3.8e-34 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000394_0757 1/1 373 460 .. 1 94 [] 119.9 3.8e-34

Alignments of top-scoring domains:
CP000394_0757: domain 1 of 1, from 373 to 460: score 119.9, E = 3.8e-34
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ+I+SLL+LQ+ +++ + + ++ ++ +++RV++
CP000394_0 373 EIHHRVKNNLQIIASLLNLQSSRIRLPQA-----KAEFQSARDRVRA 414

mAliHEeLYksedldtvdfseYlekLtenLfqsyg.vgsdgisLklDl<-
A++H++LY+ ++l ++++++l++L+e+Lfq++g+v +++i+L +
CP000394_0 415 LATLHRHLYTQGELQAINMRSFLNELCEQLFQAFGeVPGERINLH--I 460

*

CP000394_0 - -


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 9 0|=
-14 21 0|==
-13 46 15|=*===
-12 164 160|==============*
-11 617 445|========================================*================
-10 580 576|====================================================*
-9 367 487|================================== *
-8 285 326|========================== *
-7 149 194|============== *
-6 102 108|=========*
-5 43 58|==== *
-4 24 30|==*
-3 14 16|=*
-2 6 8|*
-1 4 4|*
0 3 2|*
1 0 1|*
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 180.1989
P(chi-square) = 9.326e-33

Total sequences searched: 2437

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: