hmmsearch - search a sequence database with a profile HMM

HMMER 2.3.2 (Oct 2003)

Copyright (C) 1992-2003 HHMI/Washington University School of Medicine

Freely distributed under the GNU General Public License (GPL)

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HMM file:                   /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]

Sequence database:          CP000395.Gprot.fsa

per-sequence score cutoff:  >= 32.2 [TC1]

per-domain score cutoff:    >= 32.2 [TC2]

per-sequence Eval cutoff:   [none]

per-domain Eval cutoff:     [none]

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Query HMM:   HisKA_2

Accession:   PF07568.2

Description: Histidine kinase

  [HMM has been calibrated; E-values are empirical estimates]



Scores for complete sequences (score includes all domains):

Sequence Description                                    Score    E-value  N 

-------- -----------                                    -----    ------- ---

	[no hits above thresholds]



Parsed for domains:

Sequence Domain  seq-f seq-t    hmm-f hmm-t      score  E-value

-------- ------- ----- -----    ----- -----      -----  -------

	[no hits above thresholds]



Alignments of top-scoring domains:

	[no hits above thresholds]



Histogram of all scores:

score    obs    exp  (one = represents 4 sequences)

-----    ---    ---

  -15      2      0|=                                                          

  -14      4      0|=                                                          

  -13      7      5|=*                                                         

  -12     34     56|=========    *                                             

  -11    126    156|================================      *                    

  -10    128    202|================================                  *        

   -9    191    171|==========================================*=====           

   -8    128    114|============================*===                           

   -7     80     68|================*===                                       

   -6     80     37|=========*==========                                       

   -5     34     20|====*====                                                  

   -4     14     10|==*=                                                       

   -3     15      5|=*==                                                       

   -2      6      2|*=                                                         

   -1      5      1|*=                                                         

>   0      2      -|=                                                          





% Statistical details of theoretical EVD fit:

              mu =    -9.5227

          lambda =     0.6548

chi-sq statistic =   120.2774

  P(chi-square)  =  4.445e-21



Total sequences searched: 856



Whole sequence top hits:

tophits_s report:

     Total hits:           0

     Satisfying E cutoff:  0

     Total memory:         20K



Domain top hits:

tophits_s report:

     Total hits:           0

     Satisfying E cutoff:  0

     Total memory:         20K