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4 accessions found for Rhodococcus jostii RHA1  

Data for CP000431  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000431.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000431_2890 CDS_3086814-3084592 84.5 2.3e-23 1
CP000431_4691 CDS_5007432-5008814 79.4 6.5e-22 1
CP000431_1217 CDS_1299652-1297115 68.5 8e-19 1
CP000431_2040 CDS_2182027-2180834 67.4 1.6e-18 1
CP000431_6266 CDS_6815367-6817139 66.2 3.6e-18 1
CP000431_4998 CDS_5341044-5342021 62.0 5.6e-17 1
CP000431_5567 CDS_6047839-6049314 57.3 1.2e-15 1
CP000431_3320 CDS_3545364-3543919 54.3 8.3e-15 1
CP000431_3107 CDS_3321989-3323407 47.7 6.2e-13 1
CP000431_4945 CDS_5280224-5278860 45.5 2.7e-12 1
CP000431_0073 CDS_81330-82697 41.5 3.5e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000431_2890 1/1 345 413 .. 1 87 [] 84.5 2.3e-23
CP000431_4691 1/1 239 303 .. 1 87 [] 79.4 6.5e-22
CP000431_1217 1/1 617 685 .. 1 87 [] 68.5 8e-19
CP000431_2040 1/1 153 219 .. 1 87 [] 67.4 1.6e-18
CP000431_6266 1/1 297 364 .. 1 87 [] 66.2 3.6e-18
CP000431_4998 1/1 111 175 .. 1 87 [] 62.0 5.6e-17
CP000431_5567 1/1 265 337 .. 1 87 [] 57.3 1.2e-15
CP000431_3320 1/1 250 314 .. 1 87 [] 54.3 8.3e-15
CP000431_3107 1/1 247 312 .. 1 87 [] 47.7 6.2e-13
CP000431_4945 1/1 221 287 .. 1 87 [] 45.5 2.7e-12
CP000431_0073 1/1 228 293 .. 1 87 [] 41.5 3.5e-11

Alignments of top-scoring domains:
CP000431_2890: domain 1 of 1, from 345 to 413: score 84.5, E = 2.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+ n+sHE+RTPLt ++g +e+L+e+ +el+++q
CP000431_2 345 AKTRFFQNVSHEFRTPLTLLLGPLETLRERTG------DELPADQ-- 383

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ ++r+a rl++L++dlLdls++eag
CP000431_2 384 ----------RDAIAAAYRAAVRLQQLVDDLLDLSKAEAG 413

CP000431_4691: domain 1 of 1, from 239 to 303: score 79.4, E = 6.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPLt+Irg+ael + +++++ +
CP000431_4 239 KMRRFVADASHELRTPLTTIRGFAELYRQ---------GAMTDTE-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i+ ea r+ L++dlL l+r++a+
CP000431_4 275 -----------TLMSRIEGEASRMGLLVEDLLMLARLDAQ 303

CP000431_1217: domain 1 of 1, from 617 to 685: score 68.5, E = 8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL+a++++a+ L+ d + s+e++
CP000431_1 617 LRRSLLSAVSHDLRTPLAAVKAAASSLRS-------DDVDFSPEDT- 655

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ti+++a+ l +L+ +lLd sr+ ag
CP000431_1 656 ----------AELLATIEESADVLTSLVGNLLDSSRLAAG 685

CP000431_2040: domain 1 of 1, from 153 to 219: score 67.4, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a+ ++ae+Lle ++ ++e +
CP000431_2 153 TRRDFVANVSHELKTPVGAMGLLAEALLE---------SADDPESV- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e++l+e+ rl +++ +l lsr++
CP000431_2 190 ----------RHFGERVLSESVRLGKMVTELIALSRLQGA 219

CP000431_6266: domain 1 of 1, from 297 to 364: score 66.2, E = 3.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTPLt++r++a+l+ +++ ++l++
CP000431_6 297 LQKRFTSDVSHELRTPLTTVRMAADLIHDGS-------DDLDPVL-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e + e++r + L+ dlL++sr +ag
CP000431_6 335 ----------RRSSELLVAELDRFEGLLADLLEISRHDAG 364

CP000431_4998: domain 1 of 1, from 111 to 175: score 62.0, E = 5.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ n+sHELRTP++a+++++e + +++ +e ++ +
CP000431_4 111 YRRELIGNVSHELRTPISALQALLENIVDGV-------EEPDPARM- 149

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++erl rL+ +lLdlsr e g
CP000431_4 150 --------------RVALDQTERLGRLVAELLDLSRVEGG 175

CP000431_5567: domain 1 of 1, from 265 to 337: score 57.3, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+++a++ HELRTPLt++r++ elL + + +g ++ ++e++
CP000431_5 265 RQSRLVADAGHELRTPLTSLRTNMELLIASSR---PGAPHIPDEDM- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + ++e l++L+ dl dl+r +a+
CP000431_5 308 ----------AELRTDVVAQIEELSQLVGDLVDLAREDAP 337

CP000431_3320: domain 1 of 1, from 250 to 314: score 54.3, E = 8.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+ +H+LR+PL+a+++ ++lL + ++
CP000431_3 250 AQQRLIADTAHQLRNPLAALQFRLDLLDD----------GVPDSA-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +++ +ea+rl+ +++ lL l+ +e++
CP000431_3 285 ----------REDYHSVTEEAKRLQTILDSLLSLASAETP 314

CP000431_3107: domain 1 of 1, from 247 to 312: score 47.7, E = 6.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ ++sHELR PL+++ +++el+ + ++e+ + +
CP000431_3 247 AQRRFVGDASHELRSPLATVTMALELADA--------RPEMLDRE-- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+t+l e+ r+ L++dlL l+r+++
CP000431_3 284 -----------LVRDTLLPEVTRMHLLVDDLLLLARADER 312

CP000431_4945: domain 1 of 1, from 221 to 287: score 45.5, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a +HELRTPLta+r+ +e+L + +l++eq+
CP000431_4 221 TARDFAAVSAHELRTPLTAMRTDLEVLTT---------LDLTPEQQ- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ + r+ r ++ ++dl l+r e
CP000431_4 258 ----------HEILRDLARSQGRVESTLSDLERLARGELS 287

CP000431_0073: domain 1 of 1, from 228 to 293: score 41.5, E = 3.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++++sHELR PL++I +++el+ + + ++
CP000431_0 228 AQQRFVSDASHELRSPLATITAALELAHT---------RPELVDT-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++l ea+r+++L+ dlL l+r++++
CP000431_0 264 ----------SLVDESLLPEARRMNHLLADLLLLARADEN 293


Histogram of all scores:
score obs exp (one = represents 25 sequences)
----- --- ---
-15 1 0|=
-14 5 0|=
-13 75 5|*==
-12 335 164|======*=======
-11 706 854|============================= *
-10 1251 1585|=================================================== *
-9 1468 1637|==========================================================*
-8 1259 1226|=================================================*=
-7 872 772|==============================*====
-6 498 444|=================*==
-5 320 243|=========*===
-4 199 130|=====*==
-3 89 68|==*=
-2 48 36|=*
-1 28 18|*=
0 22 9|*
1 15 5|*
2 2 2|*
3 0 1|*
4 2 0|=
5 1 0|=
6 0 0|
7 0 0|
> 8 15 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 1312.4012
P(chi-square) = 0

Total sequences searched: 7211

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: