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Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

4 accessions found for Rhodococcus jostii RHA1  

Data for CP000431  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000431.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000431_6285 CDS_6835689-6837191 123.7 9.4e-35 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000431_6285 1/1 301 383 .. 1 94 [] 123.7 9.4e-35

Alignments of top-scoring domains:
CP000431_6285: domain 1 of 1, from 301 to 383: score 123.7, E = 9.4e-35
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar++ +ee+ + aL Es++RV S
CP000431_6 301 EIHHRVKNNLQTVAALLRLQARRTNNEEA-----RQALSESVRRVTS 342

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+H+ L++s d + v+++e++++L+ L + ++v+ +k +
CP000431_6 343 IALVHDTLSMSVD-EEVNLDEVVDRLVPILSDVATVSTP---IK--V 383


Histogram of all scores:
score obs exp (one = represents 37 sequences)
----- --- ---
-15 4 0|=
-14 26 0|=
-13 127 45|=*==
-12 474 473|============*
-11 2137 1318|===================================*======================
-10 1650 1706|============================================= *
-9 1039 1441|============================= *
-8 802 967|====================== *
-7 391 574|=========== *
-6 315 319|========*
-5 108 172|=== *
-4 58 91|==*
-3 39 47|=*
-2 13 24|*
-1 15 13|*
0 8 6|*
1 2 3|*
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 901.0132
P(chi-square) = 0

Total sequences searched: 7211

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: