Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

4 accessions found for Rhodococcus jostii RHA1  

Data for CP000432  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000432.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000432_0011 CDS_9506-8211 57.2 2.1e-16 1
CP000432_0547 CDS_524601-523192 48.8 4.9e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000432_0011 1/1 214 279 .. 1 87 [] 57.2 2.1e-16
CP000432_0547 1/1 249 314 .. 1 87 [] 48.8 4.9e-14

Alignments of top-scoring domains:
CP000432_0011: domain 1 of 1, from 214 to 279: score 57.2, E = 2.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELR P+t+Ir +ae++l+ ++ +
CP000432_0 214 SQRRFVSDASHELRSPITTIRQHAEVALA---------HPDRTTT-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ e++l e r+++L++dlL l+r+++
CP000432_0 250 ----------EELAEVVLAEDLRMQHLVEDLLLLARADEH 279

CP000432_0547: domain 1 of 1, from 249 to 314: score 48.8, E = 4.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ ++sHELR PL+++ +++el+ + ++el + +
CP000432_0 249 AQRRFVGDASHELRSPLATVTMALELADA--------RPELLDRE-- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+t+l e+ r+ L++dlL l+r+++
CP000432_0 286 -----------LVRDTLLPEVTRMHLLVDDLLLLARADER 314


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 1 0|=
-13 17 0|=====
-12 76 26|======*============
-11 144 135|=================================*==
-10 216 252|====================================================== *
-9 228 260|========================================================= *
-8 191 194|================================================*
-7 108 122|=========================== *
-6 75 70|=================*=
-5 51 38|=========*===
-4 18 20|====*
-3 11 10|==*
-2 2 5|=*
-1 3 3|*
> 0 5 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 110.6905
P(chi-square) = 1.064e-19

Total sequences searched: 1146

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: