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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

4 accessions found for Rhodococcus jostii RHA1  

Data for CP000432  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000432.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000432_0052 CDS_51155-46359 71.8 2.1e-21 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000432_0052 1/1 1402 1466 .. 1 70 [] 71.8 2.1e-21

Alignments of top-scoring domains:
CP000432_0052: domain 1 of 1, from 1402 to 1466: score 71.8, E = 2.1e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIAR+LHD+ g+ +++++ +l++++ ++++ r++++ +
CP000432_0 1402 ERGRIARDLHDEFGHLFAGVMDGLSALQ-----NSEDATTRQTATDV 1443

relarealaevRrllgdLRpaal<-*
r+++r++++ +R +++ LRp++l
CP000432_0 1444 RTIVRQGIQVARTVAWSLRPSGL 1466


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 1 0|=
-13 9 0|===
-12 32 12|==*=====
-11 51 105|============= *
-10 169 243|=========================================== *
-9 210 276|===================================================== *
-8 167 213|========================================== *
-7 143 134|=================================*==
-6 124 75|==================*============
-5 105 40|=========*=================
-4 43 21|=====*=====
-3 34 10|==*======
-2 25 5|=*=====
-1 11 2|*==
0 6 1|*=
1 3 0|=
2 3 0|=
3 3 0|=
4 0 0|
5 4 0|=
6 0 0|
> 7 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 376.7394
P(chi-square) = 0

Total sequences searched: 1146

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: