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Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

4 accessions found for Rhodococcus jostii RHA1  

Data for CP000433  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000433.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000433_0122 CDS_113866-109070 64.8 9.5e-20 1
CP000433_0148 CDS_136080-140903 53.0 2.8e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000433_0122 1/1 1402 1466 .. 1 70 [] 64.8 9.5e-20
CP000433_0148 1/1 1411 1475 .. 1 70 [] 53.0 2.8e-16

Alignments of top-scoring domains:
CP000433_0122: domain 1 of 1, from 1402 to 1466: score 64.8, E = 9.5e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIAR+LHD+ g+ +++++ +l+ ++ + +++ r++++ +
CP000433_0 1402 ERGRIARDLHDEFGHLFAGVMDGLGSLQ-----SSKDAATRQTATDV 1443

relarealaevRrllgdLRpaal<-*
r+++r++++ +R +++ LRp++l
CP000433_0 1444 RTIVRKGIQIARTVAWSLRPSGL 1466

CP000433_0148: domain 1 of 1, from 1411 to 1475: score 53.0, E = 2.8e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIAR+LHD+ g+ +++i+ +l++++ + +e+ r+ +
CP000433_0 1411 ERGRIARDLHDEFGHLFAGITEGLSALE-----KVGDEATRRVTMDV 1452

relarealaevRrllgdLRpaal<-*
r+++r++++ +R ++ LRp++l
CP000433_0 1453 RKIVRQGIQAARVGAWSLRPSGL 1475


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 1 0|=
-13 5 0|===
-12 13 5|==*====
-11 16 41|======== *
-10 63 96|================================ *
-9 97 109|================================================= *
-8 71 84|==================================== *
-7 56 53|==========================*=
-6 37 30|==============*====
-5 45 16|=======*===============
-4 23 8|===*========
-3 12 4|=*====
-2 10 2|*====
-1 1 1|*
0 1 0|=
1 0 0|
2 0 0|
> 3 3 -|==


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 122.1645
P(chi-square) = 1.184e-22

Total sequences searched: 454

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: