Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

4 accessions found for Rhodococcus jostii RHA1  

Data for CP000434  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000434.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000434_0204 CDS_203497-204654 45.8 9.8e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000434_0204 1/1 159 223 .. 1 87 [] 45.8 9.8e-14

Alignments of top-scoring domains:
CP000434_0204: domain 1 of 1, from 159 to 223: score 45.8, E = 9.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l +l+HE+RTP++++ +y e+L++++ ++l++++
CP000434_0 159 TRRQLLGDLAHEIRTPVSVLEAYMEALEDGV-------ETLDADT-- 196

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++rl r +d++ ls +e+
CP000434_0 197 -------------ITMLRDQTRRLVRFSDDVRSLSHAEES 223


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 1 0|=
-13 4 0|==
-12 25 7|===*=========
-11 41 39|===================*=
-10 66 73|================================= *
-9 55 75|============================ *
-8 55 56|===========================*
-7 34 35|=================*
-6 25 20|=========*===
-5 10 11|=====*
-4 4 6|==*
-3 6 3|=*=
-2 3 1|*=
-1 1 0|=
0 2 0|=
> 1 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 47.2795
P(chi-square) = 4.923e-08

Total sequences searched: 334

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: