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Classification of phyla is from NCBI page
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39 projects found  

1 accessions found for Synechococcus sp. CC9311  

Data for CP000435  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000435.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000435_0685 CDS_662982-661531 77.9 7e-22 1
CP000435_2178 CDS_1952240-1954321 77.6 8.7e-22 1
CP000435_0654 CDS_638559-637087 71.5 4.5e-20 1
CP000435_0647 CDS_632003-633313 63.8 7e-18 1
CP000435_1105 CDS_1027451-1028449 61.4 3.2e-17 1
CP000435_0260 CDS_271865-273304 52.6 1e-14 1
CP000435_0282 CDS_297916-296897 33.8 2.2e-09 1
CP000435_1052 CDS_985380-986930 31.2 1.2e-08 1
CP000435_0979 CDS_908764-907613 27.2 1.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000435_0685 1/1 256 324 .. 1 87 [] 77.9 7e-22
CP000435_2178 1/1 421 489 .. 1 87 [] 77.6 8.7e-22
CP000435_0654 1/1 259 326 .. 1 87 [] 71.5 4.5e-20
CP000435_0647 1/1 213 278 .. 1 87 [] 63.8 7e-18
CP000435_1105 1/1 92 158 .. 1 87 [] 61.4 3.2e-17
CP000435_0260 1/1 253 320 .. 1 87 [] 52.6 1e-14
CP000435_0282 1/1 87 153 .. 1 87 [] 33.8 2.2e-09
CP000435_1052 1/1 155 221 .. 1 87 [] 31.2 1.2e-08
CP000435_0979 1/1 145 201 .. 1 80 [. 27.2 1.6e-07

Alignments of top-scoring domains:
CP000435_0685: domain 1 of 1, from 256 to 324: score 77.9, E = 7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHE+RTPLt+I+g+++ l++++ + l ++q
CP000435_0 256 NQKQFASTISHEFRTPLTVISGFIQSVLNRGE------DQLEDQQ-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++++e+ rl+r+++dlLdlsr++++
CP000435_0 295 ----------KKALGIADKEVLRLNRMLSDLLDLSRADNQ 324

CP000435_2178: domain 1 of 1, from 421 to 489: score 77.6, E = 8.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+f++n+sHELRTPL I+ y+e+L e + + ls+ ++
CP000435_2 421 AQSRFISNVSHELRTPLFNIKSYVETLYEMG-------DQLSDTDK- 459

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++ e++rl rL+nd+Ldlsr+e+
CP000435_2 460 ----------QEFLGIANAETDRLTRLVNDVLDLSRLESH 489

CP000435_0654: domain 1 of 1, from 259 to 326: score 71.5, E = 4.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt ++gy++ +++ ls+++
CP000435_0 259 DQRRFVSAVSHELRTPLTIVQGYLHRTIKRS-------KGLSDDE-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+t+++e+ r++ L++dlLdl+r ++g
CP000435_0 297 ----------RRGLKTAEEESIRMRMLLDDLLDLARGDSG 326

CP000435_0647: domain 1 of 1, from 213 to 278: score 63.8, E = 7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ +++HELRTP+t ++g+a+ L++ ++l+ e
CP000435_0 213 RERSFVDGVAHELRTPITLMSGHAQRLQR---------HPLPLEL-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++ +ea+r+ i l+dlsr+ ag
CP000435_0 249 ----------QRSISVVASEAKRMGVTITMLRDLSRATAG 278

CP000435_1105: domain 1 of 1, from 92 to 158: score 61.4, E = 3.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ nl+HELRTPL+ I g+++ L++ eq
CP000435_1 92 RQRQFIDNLAHELRTPLAIITGNLHRLKR-------------KEQ-- 123

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++r+ l+ + e++r+ L+++lL ls +++
CP000435_1 124 -----FSDNIRQSLSDATAETQRMATLVDNLLLLSELDTD 158

CP000435_0260: domain 1 of 1, from 253 to 320: score 52.6, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f++++sHEL TPLt I a L ++l t+ls+ +
CP000435_0 253 NQLLFIRAVSHELITPLTLINSSARRLDRRL-------TDLSDSD-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l +i++e+ ++L++dl dl+r e+g
CP000435_0 291 ----------RKLLASIRKEVWDADHLVRDLVDLARSESG 320

CP000435_0282: domain 1 of 1, from 87 to 153: score 33.8, E = 2.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ + + H+LR+PL+a+r+ya+lLl+ l++e+++
CP000435_0 87 QQRQQMNLVVHQLRNPLAALRTYAQLLLR----------RLGPEHLQ 123

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ +l+e +l+r i l + + +
CP000435_0 124 ----------RPLVTGLLQEQAQLDRYITSLDLIGQENLP 153

CP000435_1052: domain 1 of 1, from 155 to 221: score 31.2, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +l+H++++ L +I+gy++l ++ l+ q +
CP000435_1 155 SIGRLAGGLAHDFNNLLQVIMGYIDLSQR-----------LNNNQGI 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++yl+++ ++ r L ++L +s+ +++
CP000435_1 191 D---------AKYLKIASQACLRAAGLTKQMLSFSKGGNP 221

CP000435_0979: domain 1 of 1, from 145 to 201: score 27.2, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l++++HELRTPLta ++++ +el+ ++
CP000435_0 145 AQERLLRMVAHELRTPLTAATLAVQS------------QELGQIDI- 178

peLRledpeyreyletilreaerllrLindlLd<-*
+++ ++++r +e + L dlL+
CP000435_0 179 ----------HRFRDVLKRRLEEIALLSKDLLE 201


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 9 0|=
-14 40 0|=====
-13 120 2|*=============
-12 189 66|=======*=============
-11 320 342|==================================== *
-10 476 635|===================================================== *
-9 517 656|==========================================================*
-8 413 491|============================================== *
-7 296 309|================================= *
-6 218 178|===================*=====
-5 116 97|==========*==
-4 68 52|=====*==
-3 48 27|==*===
-2 22 14|=*=
-1 8 7|*
0 14 3|*=
1 2 2|*
2 2 1|*
3 1 0|=
> 4 13 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 348.9626
P(chi-square) = 0

Total sequences searched: 2892

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: