Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Haemophilus somnus 129PT  

Data for CP000436  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000436.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000436_0408 CDS_426401-428257 80.9 6.1e-23 1
CP000436_0906 CDS_991289-992986 47.3 2.1e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000436_0408 1/1 121 186 .. 1 87 [] 80.9 6.1e-23
CP000436_0906 1/1 353 418 .. 1 87 [] 47.3 2.1e-13

Alignments of top-scoring domains:
CP000436_0408: domain 1 of 1, from 121 to 186: score 80.9, E = 6.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ ++ ++sHELRTPL++I+g++++Ll+ ++l+e+q
CP000436_0 121 DKTALMTTISHELRTPLNGIIGLSQILLD---------DKLTEQQ-- 156

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+ti +a +l ++ +d+ dl++i+a+
CP000436_0 157 ----------RNYLKTINVSAISLTHIFSDIIDLEKIDAN 186

CP000436_0906: domain 1 of 1, from 353 to 418: score 47.3, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ a+++HE+++PLtaIr+y+e ++ ++ eeqr
CP000436_0 353 ILGEMSAGIAHEINQPLTAIRMYVEGMKYQA-----------EEQRT 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++il++++r ++i +l+ + +
CP000436_0 389 ----------QIVLDKILQQVDRSAEIIHNLMNWVKGKSS 418


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 2 0|=
-13 25 1|*====
-12 66 40|======*====
-11 186 212|=============================== *
-10 330 394|======================================================= *
-9 342 406|========================================================= *
-8 322 304|==================================================*===
-7 199 192|===============================*==
-6 140 110|==================*=====
-5 80 60|=========*====
-4 38 32|=====*=
-3 29 17|==*==
-2 9 8|=*
-1 7 4|*=
0 6 2|*
1 2 1|*
2 1 0|=
3 1 0|=
> 4 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 63.8518
P(chi-square) = 6.717e-10

Total sequences searched: 1792

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: