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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Haemophilus somnus 129PT  

Data for CP000436  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000436.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000436_1516 CDS_1703916-1705637 63.8 7.1e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000436_1516 1/1 371 443 .. 1 70 [] 63.8 7.1e-19

Alignments of top-scoring domains:
CP000436_1516: domain 1 of 1, from 371 to 443: score 63.8, E = 7.1e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrllds..dkdpeeareald
ER IARELHDs++Q Ls +k+ql l+++ l+++++++ ++ +e ++
CP000436_1 371 ERSIIARELHDSLAQVLSYLKIQLTLLKHTLQQetQDAKAKSQEIIQ 417

eirelarealaevRrllgdLR.paal<-*
++++ ++ ++R+ll ++R + ++
CP000436_1 418 DFEQAVTGGYLQLRELLATFRlTIQE 443


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 16 0|===
-13 54 0|========
-12 81 20|==*=========
-11 163 164|=======================*
-10 365 381|===================================================== *
-9 367 432|===================================================== *
-8 240 333|=================================== *
-7 184 209|=========================== *
-6 135 118|================*===
-5 95 63|========*=====
-4 47 33|====*==
-3 19 17|==*
-2 9 8|=*
-1 8 4|*=
0 4 2|*
1 1 1|*
> 2 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 249.4760
P(chi-square) = 0

Total sequences searched: 1792

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: