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Classification of phyla is from NCBI page
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4 accessions found for Burkholderia ambifaria AMMD  

Data for CP000442  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000442.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000442_0069 CDS_76656-74350 76.4 6.5e-22 1
CP000442_0961 CDS_1223747-1225975 75.1 1.6e-21 1
CP000442_0411 CDS_537040-535559 73.8 3.4e-21 1
CP000442_0211 CDS_259213-257720 63.5 3e-18 1
CP000442_0621 CDS_768359-766011 53.5 2.1e-15 1
CP000442_0085 CDS_93883-95469 52.2 4.6e-15 1
CP000442_0701 CDS_870047-871831 41.9 4e-12 2
CP000442_0170 CDS_200879-195822 37.8 5.5e-11 1
CP000442_0167 CDS_194298-193168 31.9 2.6e-09 1
CP000442_0175 CDS_205154-203742 31.8 2.8e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000442_0069 1/1 394 459 .. 1 87 [] 76.4 6.5e-22
CP000442_0961 1/1 362 426 .. 1 87 [] 75.1 1.6e-21
CP000442_0411 1/1 269 335 .. 1 87 [] 73.8 3.4e-21
CP000442_0211 1/1 266 334 .. 1 87 [] 63.5 3e-18
CP000442_0621 1/1 448 512 .. 1 87 [] 53.5 2.1e-15
CP000442_0085 1/1 157 223 .. 1 87 [] 52.2 4.6e-15
CP000442_0170 1/1 1462 1532 .. 1 87 [] 37.8 5.5e-11
CP000442_0167 1/1 149 207 .. 1 87 [] 31.9 2.6e-09
CP000442_0175 1/1 237 307 .. 1 87 [] 31.8 2.8e-09

Alignments of top-scoring domains:
CP000442_0069: domain 1 of 1, from 394 to 459: score 76.4, E = 6.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ t ++ +
CP000442_0 394 LKDELLATVSHELRTPLNVIYGWIEVLRN---------TRDDALE-- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l r++ d+Ld s + +g
CP000442_0 430 ----------QQAIDAIDRSARSLTRMVGDILDASSLATG 459

CP000442_0961: domain 1 of 1, from 362 to 426: score 75.1, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla l HELR+PLt I++++el+++ +d+ +++ +
CP000442_0 362 AKDQFLAVLGHELRNPLTPISLALELIRN-------RDGQATPNE-- 399

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+r+++++ rLi+dlLd sri g
CP000442_0 400 -------------IAIIQRQLDHMVRLIDDLLDVSRITRG 426

CP000442_0411: domain 1 of 1, from 269 to 335: score 73.8, E = 3.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f a+l+H+LRTPL+ +rg++e++l+ ++s+ +
CP000442_0 269 HLSQFSADLAHDLRTPLNNMRGATEVALA---------RPRSPGE-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +le+ l+e +rl r+i+++L l+r+e++
CP000442_0 305 ---------YQALLESNLEEYDRLARMIENVLFLARAEHP 335

CP000442_0211: domain 1 of 1, from 266 to 334: score 63.5, E = 3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ n+sH+LRTPLt++ gy+e+L ++ ++l e +r
CP000442_0 266 QRRELITNISHDLRTPLTSLHGYLETLSLKS-------DTLAETER- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++l ++ rL + l +l+r+e+g
CP000442_0 305 ----------RRYLSIALAQSTKVGRLAQALFELARLESG 334

CP000442_0621: domain 1 of 1, from 448 to 512: score 53.5, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k e l ++sH+LR PL++I gya+lLl ++ q
CP000442_0 448 QKIETLGYVSHDLRAPLSTINGYAKLLLQ----------SATRSQ-- 482

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r++++ l Li++lL++++ e +
CP000442_0 483 ----------ARLIRSIDRSIRYQLTLIDELLQYTKSELQ 512

CP000442_0085: domain 1 of 1, from 157 to 223: score 52.2, E = 4.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f+a+l+HELR+ L+ +r +++L++ + +++ +
CP000442_0 157 RLSVFIAMLAHELRNHLAPLRHSVSVLQT---------LPDPAPML- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++r++ +l rL++dlLd ri ag
CP000442_0 194 ----------AQCRDAVHRQVGQLTRLVDDLLDVGRITAG 223

CP000442_0170: domain 1 of 1, from 1462 to 1532: score 37.8, E = 5.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a++ HE+ +P++a+ + a++ l++l+ +++ + ++
CP000442_0 1462 AMGELVASIVHEIGQPIAAVDTSASAGLRWLN-----REPPDLGEA- 1502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le i r+a r ++i+ l+ +r a+
CP000442_0 1503 ----------RAMLEHINRSAARAKSIIQALRAKARKAAP 1532

CP000442_0167: domain 1 of 1, from 149 to 207: score 31.9, E = 2.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ la+ +H+LRTPLt +++ + +L++
CP000442_0 149 ELLHVLAAYAHDLRTPLTRVMLRSGMLED------------------ 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + + ++r++ + +Lin L +r++
CP000442_0 178 ----------RTLRDAMERDLAEMGELINASLACARLQCS 207

CP000442_0175: domain 1 of 1, from 237 to 307: score 31.8, E = 2.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a++ HE +P+taI + a + l++ld +++ + + +
CP000442_0 237 AYGELAASIVHEVAQPITAIDTSARAGLKWLD-----RGTPNLDAA- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ i +aer + +i+ l+ +r ea+
CP000442_0 278 ----------REMFAHICACAERARTIIRALRANARHEAP 307


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 1 0|=
-13 9 0|===
-12 33 23|=====*===
-11 93 120|======================== *
-10 166 222|========================================== *
-9 201 230|=================================================== *
-8 182 172|==========================================*===
-7 130 108|==========================*======
-6 73 62|===============*===
-5 51 34|========*====
-4 29 18|====*===
-3 13 9|==*=
-2 12 5|=*=
-1 6 2|*=
> 0 14 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 59.9103
P(chi-square) = 3.769e-09

Total sequences searched: 1013

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: