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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Shewanella sp. MR-7  

Data for CP000444  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000444.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000444_3283 CDS_3916554-3911251 104.4 3e-29 1
CP000444_3428 CDS_4096859-4093149 97.9 2e-27 1
CP000444_1168 CDS_1368035-1365228 92.5 7e-26 1
CP000444_3209 CDS_3829771-3826415 88.6 9e-25 1
CP000444_3522 CDS_4210221-4205176 84.6 1.2e-23 1
CP000444_2755 CDS_3288379-3287081 77.9 9.6e-22 1
CP000444_1107 CDS_1287014-1290067 73.2 2.1e-20 1
CP000444_0052 CDS_63263-62217 68.9 3.5e-19 1
CP000444_3737 CDS_4472583-4473629 61.7 3.8e-17 1
CP000444_1339 CDS_1561774-1562856 55.1 2.7e-15 1
CP000444_2262 CDS_2700533-2702692 51.0 4e-14 1
CP000444_3066 CDS_3664577-3665845 50.2 7.1e-14 1
CP000444_3743 CDS_4478834-4480183 50.1 7.4e-14 1
CP000444_0667 CDS_788375-789817 49.3 1.2e-13 1
CP000444_3874 CDS_4637540-4638856 48.5 2.1e-13 1
CP000444_2412 CDS_2882054-2878614 48.1 2.7e-13 1
CP000444_2131 CDS_2546848-2545448 47.9 3e-13 1
CP000444_3462 CDS_4132400-4130247 47.1 5.1e-13 1
CP000444_3936 CDS_4710387-4708252 47.0 5.6e-13 1
CP000444_1418 CDS_1655250-1653439 43.4 5.6e-12 1
CP000444_0660 CDS_777859-781377 42.8 8.8e-12 1
CP000444_3183 CDS_3798939-3800168 40.4 4e-11 1
CP000444_3713 CDS_4448564-4447329 30.6 2.5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000444_3283 1/1 1039 1104 .. 1 87 [] 104.4 3e-29
CP000444_3428 1/1 721 786 .. 1 87 [] 97.9 2e-27
CP000444_1168 1/1 300 365 .. 1 87 [] 92.5 7e-26
CP000444_3209 1/1 542 607 .. 1 87 [] 88.6 9e-25
CP000444_3522 1/1 961 1026 .. 1 87 [] 84.6 1.2e-23
CP000444_2755 1/1 205 271 .. 1 87 [] 77.9 9.6e-22
CP000444_1107 1/1 507 572 .. 1 87 [] 73.2 2.1e-20
CP000444_0052 1/1 127 195 .. 1 87 [] 68.9 3.5e-19
CP000444_3737 1/1 126 191 .. 1 87 [] 61.7 3.8e-17
CP000444_1339 1/1 136 202 .. 1 87 [] 55.1 2.7e-15
CP000444_2262 1/1 498 563 .. 1 87 [] 51.0 4e-14
CP000444_3066 1/1 200 269 .. 1 87 [] 50.2 7.1e-14
CP000444_3743 1/1 235 297 .. 1 87 [] 50.1 7.4e-14
CP000444_0667 1/1 261 326 .. 1 87 [] 49.3 1.2e-13
CP000444_3874 1/1 233 293 .. 1 87 [] 48.5 2.1e-13
CP000444_2412 1/1 783 849 .. 1 87 [] 48.1 2.7e-13
CP000444_2131 1/1 249 315 .. 1 87 [] 47.9 3e-13
CP000444_3462 1/1 494 562 .. 1 87 [] 47.1 5.1e-13
CP000444_3936 1/1 467 534 .. 1 87 [] 47.0 5.6e-13
CP000444_1418 1/1 378 446 .. 1 87 [] 43.4 5.6e-12
CP000444_0660 1/1 784 849 .. 1 87 [] 42.8 8.8e-12
CP000444_3183 1/1 189 250 .. 1 87 [] 40.4 4e-11
CP000444_3713 1/1 201 265 .. 1 87 [] 30.6 2.5e-08

Alignments of top-scoring domains:
CP000444_3283: domain 1 of 1, from 1039 to 1104: score 104.4, E = 3e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l tel+ +q
CP000444_3 1039 AKGDFLANMSHEIRTPMNAIIGMSQLCLQ---------TELDKKQ-- 1074

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+r++++ll++ind+Ld+s+ieag
CP000444_3 1075 ----------KNYVEKIERASKSLLSIINDILDFSKIEAG 1104

CP000444_3428: domain 1 of 1, from 721 to 786: score 97.9, E = 2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP000444_3 721 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTAQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++ +a++llr+ind+Ld+s+ieag
CP000444_3 757 ----------KDYLEKAGFSAQSLLRIINDILDFSKIEAG 786

CP000444_1168: domain 1 of 1, from 300 to 365: score 92.5, E = 7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
CP000444_1 300 IKSEFLANMSHELRTPLNGVIGFARQLVK---------TPLHSSQ-- 335

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll++ind+Ld+s++eag
CP000444_1 336 ----------VDYINTIERSATNLLAIINDILDFSKLEAG 365

CP000444_3209: domain 1 of 1, from 542 to 607: score 88.6, E = 9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ flan+sHE+RTP++aI+g++++Lle + l+ eq
CP000444_3 542 ARAAFLANMSHEIRTPMNAIIGFSDILLE---------SVLDNEQ-- 577

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ti r+a++l +L+nd+Ld ++++ g
CP000444_3 578 ----------HKQLSTINRSAKSLMHLLNDVLDSAKLDKG 607

CP000444_3522: domain 1 of 1, from 961 to 1026: score 84.6, E = 1.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g++ l l tels++q
CP000444_3 961 AKSDFLANMSHEIRTPMNAILGMSYLVLQ---------TELSSKQ-- 996

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+ +++++a +ll ++nd+Ld+s+iea+
CP000444_3 997 ----------RDYVGKVHQAAGSLLGILNDILDFSKIEAE 1026

CP000444_2755: domain 1 of 1, from 205 to 271: score 77.9, E = 9.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ + ++ +
CP000444_2 205 MRKEFVANVSHELKTPLTVLQGYLEMMQS---------MAEPDSMN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++++++r+++++++lL lsrie
CP000444_2 242 ----------AKPLALMQQQTRRMQSMVEQLLVLSRIEDA 271

CP000444_1107: domain 1 of 1, from 507 to 572: score 73.2, E = 2.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++++g++ lL + l++ q
CP000444_1 507 AKSQFLATMSHEIRTPLNGLLGTLTLLGH---------SQLPPVQ-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ ++d+Ld+sr+e+g
CP000444_1 543 ----------QQMLALSQYSGTLLQTVLSDILDFSRLEQG 572

CP000444_0052: domain 1 of 1, from 127 to 195: score 68.9, E = 3.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L+e++ ++ls+eq+
CP000444_0 127 LRNSILLSVSHDLRTPLATIIGTLTTLKEYQ-------AKLSPEQN- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++++ e++rl + i++lL+ +++++g
CP000444_0 166 ----------EELIDSAAAESHRLHQYIENLLQATKLQHG 195

CP000444_3737: domain 1 of 1, from 126 to 191: score 61.7, E = 3.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el+++ +
CP000444_3 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELDDPAQ- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ i+++a+rl++L+++lL r +
CP000444_3 162 ----------KEFTNLIIEQADRLRSLVDRLLGPQRPTQH 191

CP000444_1339: domain 1 of 1, from 136 to 202: score 55.1, E = 2.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya L ++lse+ +
CP000444_1 136 ALGKMVATLAHQVRTPLSAALLYAANLAS---------PKLSEPAK- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ + ++ l+r++nd+L +++ ++
CP000444_1 173 ----------AKFQQKLVDRLNELERQVNDMLLMAKGRQD 202

CP000444_2262: domain 1 of 1, from 498 to 563: score 51.0, E = 4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L ++l+ ++
CP000444_2 498 YLENMSSRLSHELRTPVAVVRSSLEHLNL---------QTLDKDT-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
CP000444_2 534 ----------QKYVDRAQEGVSRLSMILNNMSEATRLEQS 563

CP000444_3066: domain 1 of 1, from 200 to 269: score 50.2, E = 7.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ ++ ++ s+eq++
CP000444_3 200 NQKHLSNAVSHEIRTPLARLKFALALMPMYC-------QPDSDEQKR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ +++L+++lL+++ +e++
CP000444_3 240 ----------QDFLNEMQLDIKEMENLLQELLTYASLESQ 269

CP000444_3743: domain 1 of 1, from 235 to 297: score 50.1, E = 7.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++ + l+++ + ++ e+
CP000444_3 235 NQQRLMGDISHELRTPLTRLQLSLALARK--------KGQQTTET-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i eae+l++Li +lL+lsr
CP000444_3 272 --------------DRIAYEAEQLEQLIAELLELSRVKLS 297

CP000444_0667: domain 1 of 1, from 261 to 326: score 49.3, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fl +lsH+L+TPLt+++gy+e+ l t+ +
CP000444_0 261 ARQQFLLHLSHDLKTPLTSLLGYLETYLI---------TPEHQRD-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le r++e l ++ +lL+l+ +e+g
CP000444_0 297 ----------TAWLEAGMRSGEKLKGQLGELLELAALENG 326

CP000444_3874: domain 1 of 1, from 233 to 293: score 48.5, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000444_3 233 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++i+++ + r +++
CP000444_3 264 ----------QYLKDGIVNDIEDMDAIISQFIAYIRQDQE 293

CP000444_2412: domain 1 of 1, from 783 to 849: score 48.1, E = 2.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000444_2 783 SKSRFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDREA-- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP000444_2 820 ----------RTTLSHVNSSLKTAGELLTDLLDISKLDSG 849

CP000444_2131: domain 1 of 1, from 249 to 315: score 47.9, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL+TPL++I+++ + L+ + +e ++e
CP000444_2 249 RERRFSADAAHELKTPLSVIKLHQQGLEGLV-------GEGDAER-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i+ ++++++ +++lL l+r ++
CP000444_2 287 -----------IHLAAIDAGVKHMSHTVEQLLLLARVDSI 315

CP000444_3462: domain 1 of 1, from 494 to 562: score 47.1, E = 5.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I ++ L eel +e ++e +
CP000444_3 494 ELDQFAYIASHDLKSPLRGIEQLTNWLSEEL-------AENTDENI- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++ ++r+ L++ lL +sri+
CP000444_3 533 ----------QKYLGLIQSRIQRMVLLLDGLLMFSRIGRV 562

CP000444_3936: domain 1 of 1, from 467 to 534: score 47.0, E = 5.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ elL+ el ++e +
CP000444_3 467 ALGELTAGIAHEINNPTAVILGNMELLRYEL--------GDNAESV- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
CP000444_3 505 ----------KEEIDLVIQQVGRISTIIRSLLQYSRPGEF 534

CP000444_1418: domain 1 of 1, from 378 to 446: score 43.4, E = 5.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HEL++PL+a+r ya+ +++l +++++
CP000444_1 378 VIGSLSASINHELNQPLAALRSYAQNTQTFLA------RNMPDKA-- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i++ ++rl +++ ++ ++r +g
CP000444_1 417 ----------SDNLKIIIELTDRLADIVGQFKSFTRKSQG 446

CP000444_0660: domain 1 of 1, from 784 to 849: score 42.8, E = 8.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +P +a+ +++e+L+ ++ ++
CP000444_0 784 SKTRFLAAASHDLMQPFNALTLFTEMLKQ----------RVTSTEL- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+ +++ ++L++dl ++sr++ g
CP000444_0 820 ----------KDLATHIEASLNVVESLLSDLVEISRLDGG 849

CP000444_3183: domain 1 of 1, from 189 to 250: score 40.4, E = 4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e+ +++sHE RTPL+ +r+++e+++ + d
CP000444_3 189 MHKELSRTISHEVRTPLARMRFALEIIRPQID--------------- 220

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +++ ++++ +++L + L ++r+e+
CP000444_3 221 ----------SNYAQRLSEDIDDIEQLAANYLSFARLEHK 250

CP000444_3713: domain 1 of 1, from 201 to 265: score 30.6, E = 2.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ Ir +e L +++ +e se
CP000444_3 201 AVRGVTDNIAHDLRTPLSHIRIGLEELAAKS------PDEISEGC-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e++++l+ + +L l+rie+g
CP000444_3 240 --------------AILTEELDHCLATFDAMLSLTRIEEG 265


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 3 0|=
-13 47 3|*===
-12 169 91|======*======
-11 357 474|========================== *
-10 670 880|================================================ *
-9 797 909|========================================================= *
-8 665 681|================================================*
-7 519 429|==============================*=======
-6 304 247|=================*====
-5 187 135|=========*====
-4 109 72|=====*==
-3 62 38|==*==
-2 35 20|=*=
-1 25 10|*=
0 13 5|*
1 5 2|*
2 4 1|*
3 1 0|=
4 1 0|=
5 0 0|
6 0 0|
7 1 0|=
8 0 0|
9 0 0|
10 1 0|=
11 0 0|
12 0 0|
> 13 31 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 285.4160
P(chi-square) = 0

Total sequences searched: 4006

Whole sequence top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: