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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Shewanella sp. MR-4  

Data for CP000446  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000446.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000446_0713 CDS_829768-835071 104.4 2.9e-29 1
CP000446_0575 CDS_662671-666381 97.9 2e-27 1
CP000446_1107 CDS_1302226-1299419 92.5 6.9e-26 1
CP000446_0789 CDS_922705-926061 88.1 1.2e-24 1
CP000446_0480 CDS_548242-553287 84.6 1.2e-23 1
CP000446_2697 CDS_3231165-3229867 77.7 1.1e-21 1
CP000446_1047 CDS_1224605-1227658 72.5 3.3e-20 1
CP000446_0053 CDS_63680-62634 68.9 3.4e-19 1
CP000446_0257 CDS_277765-276719 61.7 3.7e-17 1
CP000446_1276 CDS_1486269-1487351 53.7 6.6e-15 1
CP000446_2194 CDS_2631985-2634144 51.0 4e-14 1
CP000446_2996 CDS_3593596-3594864 50.5 5.6e-14 1
CP000446_0250 CDS_271513-270164 50.2 6.5e-14 1
CP000446_3262 CDS_3911692-3910250 48.6 1.9e-13 1
CP000446_3793 CDS_4551539-4552855 48.5 2e-13 1
CP000446_2350 CDS_2816351-2812911 48.1 2.7e-13 1
CP000446_1820 CDS_2168105-2169505 47.9 2.9e-13 1
CP000446_0541 CDS_627149-629302 47.6 3.7e-13 1
CP000446_3853 CDS_4623113-4620984 46.6 7.1e-13 1
CP000446_1356 CDS_1583686-1581875 43.4 5.5e-12 1
CP000446_3269 CDS_3922194-3918688 42.8 8.6e-12 1
CP000446_0816 CDS_953932-952703 40.4 3.9e-11 1
CP000446_0634 CDS_737763-739811 36.4 5.6e-10 1
CP000446_0280 CDS_301776-303011 30.6 2.5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000446_0713 1/1 1039 1104 .. 1 87 [] 104.4 2.9e-29
CP000446_0575 1/1 721 786 .. 1 87 [] 97.9 2e-27
CP000446_1107 1/1 300 365 .. 1 87 [] 92.5 6.9e-26
CP000446_0789 1/1 542 607 .. 1 87 [] 88.1 1.2e-24
CP000446_0480 1/1 961 1026 .. 1 87 [] 84.6 1.2e-23
CP000446_2697 1/1 205 271 .. 1 87 [] 77.7 1.1e-21
CP000446_1047 1/1 507 572 .. 1 87 [] 72.5 3.3e-20
CP000446_0053 1/1 127 195 .. 1 87 [] 68.9 3.4e-19
CP000446_0257 1/1 126 191 .. 1 87 [] 61.7 3.7e-17
CP000446_1276 1/1 136 202 .. 1 87 [] 53.7 6.6e-15
CP000446_2194 1/1 498 563 .. 1 87 [] 51.0 4e-14
CP000446_2996 1/1 200 269 .. 1 87 [] 50.5 5.6e-14
CP000446_0250 1/1 235 297 .. 1 87 [] 50.2 6.5e-14
CP000446_3262 1/1 261 326 .. 1 87 [] 48.6 1.9e-13
CP000446_3793 1/1 233 293 .. 1 87 [] 48.5 2e-13
CP000446_2350 1/1 783 849 .. 1 87 [] 48.1 2.7e-13
CP000446_1820 1/1 249 315 .. 1 87 [] 47.9 2.9e-13
CP000446_0541 1/1 494 562 .. 1 87 [] 47.6 3.7e-13
CP000446_3853 1/1 467 534 .. 1 87 [] 46.6 7.1e-13
CP000446_1356 1/1 378 446 .. 1 87 [] 43.4 5.5e-12
CP000446_3269 1/1 780 845 .. 1 87 [] 42.8 8.6e-12
CP000446_0816 1/1 189 250 .. 1 87 [] 40.4 3.9e-11
CP000446_0634 1/1 449 518 .. 1 87 [] 36.4 5.6e-10
CP000446_0280 1/1 201 265 .. 1 87 [] 30.6 2.5e-08

Alignments of top-scoring domains:
CP000446_0713: domain 1 of 1, from 1039 to 1104: score 104.4, E = 2.9e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l tel+ +q
CP000446_0 1039 AKGDFLANMSHEIRTPMNAIIGMSQLCLQ---------TELDKKQ-- 1074

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+r++++ll++ind+Ld+s+ieag
CP000446_0 1075 ----------KNYVEKIERASKSLLSIINDILDFSKIEAG 1104

CP000446_0575: domain 1 of 1, from 721 to 786: score 97.9, E = 2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP000446_0 721 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTAQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++ +a++llr+ind+Ld+s+ieag
CP000446_0 757 ----------KDYLEKAGFSAQSLLRIINDILDFSKIEAG 786

CP000446_1107: domain 1 of 1, from 300 to 365: score 92.5, E = 6.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
CP000446_1 300 IKSEFLANMSHELRTPLNGVIGFARQLVK---------TPLHSSQ-- 335

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll++ind+Ld+s++eag
CP000446_1 336 ----------VDYINTIERSATNLLAIINDILDFSKLEAG 365

CP000446_0789: domain 1 of 1, from 542 to 607: score 88.1, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ flan+sHE+RTP++aI+g++++Lle + l+ eq
CP000446_0 542 ARAAFLANMSHEIRTPMNAIIGFSDILLE---------SVLDTEQ-- 577

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ti r+a++l +L+nd+Ld ++++ g
CP000446_0 578 ----------HKQLSTINRSAKSLMHLLNDVLDSAKLDKG 607

CP000446_0480: domain 1 of 1, from 961 to 1026: score 84.6, E = 1.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g++ l l tels++q
CP000446_0 961 AKSDFLANMSHEIRTPMNAILGMSYLVLQ---------TELSSKQ-- 996

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+ +++++a +ll ++nd+Ld+s+iea+
CP000446_0 997 ----------RDYVGKVHQAAGSLLGILNDILDFSKIEAE 1026

CP000446_2697: domain 1 of 1, from 205 to 271: score 77.7, E = 1.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ a+ + ++++
CP000446_2 205 MRKEFVANVSHELKTPLTVLQGYLEMMQS-----MAEPGSMNAKP-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++++++r+++++++lL lsrie
CP000446_2 245 -------------LALMQQQTRRMQSMVEQLLVLSRIEDA 271

CP000446_1047: domain 1 of 1, from 507 to 572: score 72.5, E = 3.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++++g++ lL + l++ q
CP000446_1 507 AKSQFLATMSHEIRTPLNGLLGTLTLLGH---------SQLPPAQ-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ ++d+Ld+sr+e+g
CP000446_1 543 ----------QQMLALSQYSGTLLQTVLSDILDFSRLEQG 572

CP000446_0053: domain 1 of 1, from 127 to 195: score 68.9, E = 3.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L+e++ ++ls+eq+
CP000446_0 127 LRNSILLSVSHDLRTPLATIIGTLTTLKEYQ-------AKLSPEQN- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++++ e++rl + i++lL+ +++++g
CP000446_0 166 ----------EELIDSAAAESHRLHQYIENLLQATKLQHG 195

CP000446_0257: domain 1 of 1, from 126 to 191: score 61.7, E = 3.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el+++ +
CP000446_0 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELDDPAQ- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ i+++a+rl++L+++lL r +
CP000446_0 162 ----------KEFTNLIIEQADRLRSLVDRLLGPQRPTQH 191

CP000446_1276: domain 1 of 1, from 136 to 202: score 53.7, E = 6.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya L ++lse +
CP000446_1 136 ALGKMVATLAHQVRTPLSAALLYAANLAS---------PKLSESAK- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ + ++ l+r++nd+L +++ ++
CP000446_1 173 ----------AKFQQKLVDRLNELERQVNDMLLMAKGRQD 202

CP000446_2194: domain 1 of 1, from 498 to 563: score 51.0, E = 4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L ++l+ ++
CP000446_2 498 YLENMSSRLSHELRTPVAVVRSSLEHLNL---------QTLDKDT-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
CP000446_2 534 ----------QKYVDRAQEGVSRLSMILNNMSEATRLEQS 563

CP000446_2996: domain 1 of 1, from 200 to 269: score 50.5, E = 5.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ ++ ++ s+eq++
CP000446_2 200 NQKHLSNAVSHEIRTPLARLKFALALMPMYC-------QPDSDEQKR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ +++L+++lL+++ +ea+
CP000446_2 240 ----------QDFLNEMQLDIKEMENLLQELLTYASLEAQ 269

CP000446_0250: domain 1 of 1, from 235 to 297: score 50.2, E = 6.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++ + l+++ + ++ e+
CP000446_0 235 NQQRLMGDISHELRTPLTRLQLSLALARK--------KGQQTTET-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i eae+l++Li +lL+lsr
CP000446_0 272 --------------DRIAYEAEQLEKLIAELLELSRVKLS 297

CP000446_3262: domain 1 of 1, from 261 to 326: score 48.6, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fl +lsH+L+TPLt+++gy+e+ l t+ +
CP000446_3 261 ARQQFLLHLSHDLKTPLTSLLGYLETYLI---------TTEHQRD-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le r++e l ++ +lL+l+ +e+g
CP000446_3 297 ----------TAWLEAGMRSGEKLKGQLGELLELAALENG 326

CP000446_3793: domain 1 of 1, from 233 to 293: score 48.5, E = 2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000446_3 233 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++i+++ + r +++
CP000446_3 264 ----------QYLKDGIVNDIEDMDAIISQFIAYIRQDQE 293

CP000446_2350: domain 1 of 1, from 783 to 849: score 48.1, E = 2.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000446_2 783 SKSRFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDREA-- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP000446_2 820 ----------RTTLSHVNSSLKTAGELLTDLLDISKLDSG 849

CP000446_1820: domain 1 of 1, from 249 to 315: score 47.9, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL+TPL++I+++ + L+ + +e ++e
CP000446_1 249 RERRFSADAAHELKTPLSVIKLHQQGLEGLV-------GEGDAER-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i+ ++++++ +++lL l+r ++
CP000446_1 287 -----------IHLAAIDAGVKHMSHTVEQLLLLARVDSI 315

CP000446_0541: domain 1 of 1, from 494 to 562: score 47.6, E = 3.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I ++ L e+l +e ++e +
CP000446_0 494 ELDQFAYIASHDLKSPLRGIEQLTNWLSEDL-------AENTDENV- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++ ++r+ L++ lL +sri+
CP000446_0 533 ----------QKYLGLIQSRIQRMVLLLDGLLMFSRIGRV 562

CP000446_3853: domain 1 of 1, from 467 to 534: score 46.6, E = 7.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ elL+ el ++ e
CP000446_3 467 ALGELTAGIAHEINNPTAVILGNMELLRYEL-------GDNAEVV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
CP000446_3 505 ----------KEEIDLVIQQVGRISTIIRSLLQYSRPGEF 534

CP000446_1356: domain 1 of 1, from 378 to 446: score 43.4, E = 5.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HEL++PL+a+r ya+ +++l +++++
CP000446_1 378 VIGSLSASINHELNQPLAALRSYAQNTQTFLA------RNMPDKA-- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i++ ++rl +++ ++ ++r +g
CP000446_1 417 ----------SDNLKIIIELTDRLADIVGQFKSFTRKSQG 446

CP000446_3269: domain 1 of 1, from 780 to 845: score 42.8, E = 8.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +P +a+ +++e+L+ ++ ++
CP000446_3 780 SKTRFLAAASHDLMQPFNALTLFTEMLKQ----------RVTSTEL- 815

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+ +++ ++L++dl ++sr++ g
CP000446_3 816 ----------KDLATHIEASLNVVESLLSDLVEISRLDGG 845

CP000446_0816: domain 1 of 1, from 189 to 250: score 40.4, E = 3.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e+ +++sHE RTPL+ +r+++e+++ + d
CP000446_0 189 MHKELSRTISHEVRTPLARMRFALEIIRPQID--------------- 220

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +++ ++++ +++L + L ++r+e+
CP000446_0 221 ----------SNYAQRLSEDIDDIEQLAANYLSFARLEHK 250

CP000446_0634: domain 1 of 1, from 449 to 518: score 36.4, E = 5.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ a+lsHEL++PL+aI y++ ++ +l ++++++ee
CP000446_0 449 IAGELGASLSHELNQPLAAIGHYCHGAEVRL-----QRGTRPEEL-- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i++e+ r +++i++l+ l + +
CP000446_0 489 ----------QAVLNLIQQEVSRADSIISRLRNLLKKRPV 518

CP000446_0280: domain 1 of 1, from 201 to 265: score 30.6, E = 2.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ Ir +e L +++ +e se
CP000446_0 201 AVRGVTDNIAHDLRTPLSHIRIGLEELAAKS------PDEISEGC-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e++++l+ + +L l+rie+g
CP000446_0 240 --------------AILTEELDHCLATFDAMLSLTRIEEG 265


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 5 0|=
-13 45 2|*===
-12 159 89|======*======
-11 346 465|=========================== *
-10 670 862|==================================================== *
-9 766 891|==========================================================*
-8 657 667|===================================================*
-7 506 420|================================*======
-6 309 241|==================*=====
-5 187 132|==========*====
-4 98 71|=====*==
-3 62 37|==*==
-2 33 19|=*=
-1 25 10|*=
0 14 5|*=
1 3 2|*
2 3 1|*
3 1 0|=
4 1 0|=
5 0 0|
6 0 0|
7 1 0|=
8 0 0|
9 0 0|
10 1 0|=
11 0 0|
12 0 0|
> 13 32 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 273.1602
P(chi-square) = 0

Total sequences searched: 3924

Whole sequence top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: