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Classification of phyla is from NCBI page
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Data for CP000448  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000448.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000448_0571 CDS_697173-692845 99.4 5e-28 1
CP000448_0908 CDS_1079516-1080556 86.7 1.9e-24 1
CP000448_1277 CDS_1539423-1537132 85.0 5.8e-24 1
CP000448_0360 CDS_455466-453973 83.4 1.6e-23 1
CP000448_2108 CDS_2513709-2512507 64.3 4.4e-18 1
CP000448_2064 CDS_2450175-2447992 59.3 1.1e-16 1
CP000448_1619 CDS_1909201-1907804 53.6 4.6e-15 1
CP000448_1007 CDS_1201293-1202774 52.0 1.3e-14 1
CP000448_1856 CDS_2184365-2181729 51.7 1.6e-14 1
CP000448_0994 CDS_1183050-1185140 31.7 7.5e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000448_0571 1/1 818 883 .. 1 87 [] 99.4 5e-28
CP000448_0908 1/1 122 189 .. 1 87 [] 86.7 1.9e-24
CP000448_1277 1/1 279 344 .. 1 87 [] 85.0 5.8e-24
CP000448_0360 1/1 23 88 .. 1 87 [] 83.4 1.6e-23
CP000448_2108 1/1 177 242 .. 1 85 [. 64.3 4.4e-18
CP000448_2064 1/1 504 572 .. 1 87 [] 59.3 1.1e-16
CP000448_1619 1/1 245 309 .. 1 87 [] 53.6 4.6e-15
CP000448_1007 1/1 276 341 .. 1 87 [] 52.0 1.3e-14
CP000448_1856 1/1 658 723 .. 1 87 [] 51.7 1.6e-14
CP000448_0994 1/1 475 545 .. 1 87 [] 31.7 7.5e-09

Alignments of top-scoring domains:
CP000448_0571: domain 1 of 1, from 818 to 883: score 99.4, E = 5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP+++I+g++elL e tels eq
CP000448_0 818 AKSLFLANMSHEIRTPMNGILGFLELLGE---------TELSTEQ-- 853

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ ++r++e ll Lind+Ld+s+ieag
CP000448_0 854 ----------QDYVQEAHRASEILLYLINDILDFSKIEAG 883

CP000448_0908: domain 1 of 1, from 122 to 189: score 86.7, E = 1.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s f+ n+sHELRTPLt+I+g++e+Ll+++ e s+
CP000448_0 122 IRSAFVGNVSHELRTPLTSIKGFVETLLDGA-------MENSDTC-- 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i+ e++rl rLi+dlL+ls ie++
CP000448_0 160 ----------RRFLSIIDTETNRLTRLIEDLLTLSSIESQ 189

CP000448_1277: domain 1 of 1, from 279 to 344: score 85.0, E = 5.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak eflan+sHE+RTPL+aI+g+++l l ++ ++q
CP000448_1 279 AKAEFLANMSHEIRTPLNAIIGMTSLSLL---------SNPEPDQ-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e le+i+ +++ ll++i+++Ld+s+ieag
CP000448_1 315 ----------KENLEIIKMAGDTLLSIIDNILDFSKIEAG 344

CP000448_0360: domain 1 of 1, from 23 to 88: score 83.4, E = 1.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP+ +I+g ++lL ++ls +q
CP000448_0 23 AKSQFLANMSHEIRTPIIGILGSLDLLDQ---------SDLSQQQ-- 58

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i++++e+ll++++++Ld s+ie+
CP000448_0 59 ----------ATNISIIRECGEQLLQIVDNILDVSKIESD 88

CP000448_2108: domain 1 of 1, from 177 to 242: score 64.3, E = 4.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPL++I++++ l+ ++ +e s e +
CP000448_2 177 KQRQFIADASHELRTPLAVIKTNLALITAN--------SEESVESQ- 214

peLRledpeyreyletilreaerllrLindlLdlsrie<-*
+ ++ i ++++++ +L++d+L l+ri+
CP000448_2 215 ----------SRWIDYISSQTDSMANLVDDMLALARID 242

CP000448_2064: domain 1 of 1, from 504 to 572: score 59.3, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+LR PL +I+g++ lLl +l+ +++
CP000448_2 504 EMERFTYTVSHDLRSPLITIKGFSGLLLQDLE------KGKTARL-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i++++ +++L++dlL+lsri+
CP000448_2 543 ----------QKDIQRIINASGKMEELLEDLLELSRIGRI 572

CP000448_1619: domain 1 of 1, from 245 to 309: score 53.6, E = 4.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a++sHELRTPLt +rg +e +++ + + +
CP000448_1 245 NRRRLTADISHELRTPLTFLRGQLEGMQT---------GSIPLDV-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +++e+ rl++L+ +l ls e+
CP000448_1 281 -----------ENIALLQDEVIRLSHLVKELDNLSLVENR 309

CP000448_1007: domain 1 of 1, from 276 to 341: score 52.0, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++a++ HE+R+P+t++rgy+++++e + ++
CP000448_1 276 LVGEMAASIGHEIRNPMTTVRGYLQIMRE---------NKVYIQE-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey++ +++e++r +++i d+L l++
CP000448_1 312 ----------LEYFDLMIEELDRANAIITDFLSLAKNKMV 341

CP000448_1856: domain 1 of 1, from 658 to 723: score 51.7, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++a++ HE R+P+t++rg+++l+ + tel+ q
CP000448_1 658 TVGEMAAGIGHEVRNPMTTVRGFLQLMSQN--------TELTKYQ-- 694

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++t+l+e++r +++i+++L l++
CP000448_1 695 -----------AYFDTMLEELDRANSIISEFLSLAKNKMV 723

CP000448_0994: domain 1 of 1, from 475 to 545: score 31.7, E = 7.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++ +++H+ R+PL++I+++a L+ +ld ++ e+ +
CP000448_0 475 AMGEMIGMIAHQWRQPLSSISTLAGNLKVYLD------LDMYEKNQ- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le i + a++l++ ind++ + + +++
CP000448_0 515 ---------FLSLLEEINHHAQYLSSTINDFRHFFKPDNP 545


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 5 0|=
-13 26 1|*===
-12 90 57|=======*====
-11 246 296|=============================== *
-10 443 550|======================================================== *
-9 447 568|======================================================== *
-8 427 425|=====================================================*
-7 284 268|=================================*==
-6 186 154|===================*====
-5 146 84|==========*========
-4 81 45|=====*=====
-3 45 23|==*===
-2 30 12|=*==
-1 14 6|*=
0 10 3|*=
1 4 1|*
2 3 0|=
3 1 0|=
4 1 0|=
> 5 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 205.4508
P(chi-square) = 5.494e-38

Total sequences searched: 2504

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: