Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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1 accessions found for   

Data for CP000449  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000449.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000449_2534 CDS_2767277-2766186 82.7 3.2e-24 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000449_2534 1/1 170 237 .. 1 70 [] 82.7 3.2e-24

Alignments of top-scoring domains:
CP000449_2534: domain 1 of 1, from 170 to 237: score 82.7, E = 3.2e-24
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIAR+LHD +g++Ls+++l++e a++l+ d d ++ar++l++i
CP000449_2 170 ERQRIARDLHDLLGHTLSVVTLKAEIAEKLI--DQDRDRARRELRAI 214

relarealaevRrllgdLRpaal<-*
+ ++rea+aevR+++ +LR l
CP000449_2 215 QSISREAMAEVREAVIGLRGRSL 237


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 3 0|=
-13 21 0|==
-12 58 34|===*==
-11 96 280|========= *
-10 355 651|================================= *
-9 603 739|======================================================= *
-8 440 570|======================================== *
-7 455 358|================================*=========
-6 348 202|==================*=============
-5 277 108|=========*================
-4 154 56|=====*========
-3 87 29|==*=====
-2 64 14|=*====
-1 50 7|*====
0 16 3|*=
1 15 1|*=
2 7 0|=
3 6 0|=
4 2 0|=
5 1 0|=
6 1 0|=
7 0 0|
8 1 0|=
9 1 0|=
10 0 0|
> 11 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1396.4554
P(chi-square) = 0

Total sequences searched: 3063

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: