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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Alkalilimnicola ehrlichii MLHE-1  

Data for CP000453  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000453.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000453_0661 CDS_732876-730123 100.0 3.9e-28 1
CP000453_1099 CDS_1292300-1293631 89.5 3.5e-25 1
CP000453_2411 CDS_2764912-2763023 85.1 6.1e-24 1
CP000453_1366 CDS_1575404-1576903 70.2 1e-19 1
CP000453_2526 CDS_2889319-2887649 70.2 1.1e-19 1
CP000453_0015 CDS_18231-19283 66.0 1.6e-18 1
CP000453_1787 CDS_2060677-2062047 65.2 2.8e-18 1
CP000453_1818 CDS_2093295-2091232 54.0 4.2e-15 1
CP000453_0670 CDS_747465-744538 48.4 1.6e-13 1
CP000453_2135 CDS_2449336-2446832 47.5 2.8e-13 1
CP000453_1139 CDS_1344943-1346307 46.2 6.5e-13 1
CP000453_1682 CDS_1938026-1935951 44.0 2.9e-12 1
CP000453_2605 CDS_2974997-2972808 40.4 2.9e-11 1
CP000453_1629 CDS_1880279-1878840 38.0 1.4e-10 1
CP000453_1607 CDS_1849446-1851125 36.8 3e-10 1
CP000453_1992 CDS_2281857-2280445 30.4 1.9e-08 1
CP000453_0215 CDS_252684-254150 27.7 1.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000453_0661 1/1 679 746 .. 1 87 [] 100.0 3.9e-28
CP000453_1099 1/1 206 272 .. 1 87 [] 89.5 3.5e-25
CP000453_2411 1/1 290 356 .. 1 87 [] 85.1 6.1e-24
CP000453_1366 1/1 273 339 .. 1 87 [] 70.2 1e-19
CP000453_2526 1/1 307 373 .. 1 87 [] 70.2 1.1e-19
CP000453_0015 1/1 129 186 .. 1 79 [. 66.0 1.6e-18
CP000453_1787 1/1 220 288 .. 1 87 [] 65.2 2.8e-18
CP000453_1818 1/1 456 526 .. 1 87 [] 54.0 4.2e-15
CP000453_0670 1/1 756 821 .. 1 87 [] 48.4 1.6e-13
CP000453_2135 1/1 593 663 .. 1 87 [] 47.5 2.8e-13
CP000453_1139 1/1 245 303 .. 1 87 [] 46.2 6.5e-13
CP000453_1682 1/1 452 519 .. 1 87 [] 44.0 2.9e-12
CP000453_2605 1/1 498 570 .. 1 87 [] 40.4 2.9e-11
CP000453_1629 1/1 232 296 .. 1 87 [] 38.0 1.4e-10
CP000453_1607 1/1 328 396 .. 1 87 [] 36.8 3e-10
CP000453_1992 1/1 215 310 .. 1 87 [] 30.4 1.9e-08
CP000453_0215 1/1 270 336 .. 1 87 [] 27.7 1.2e-07

Alignments of top-scoring domains:
CP000453_0661: domain 1 of 1, from 679 to 746: score 100.0, E = 3.9e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef++++sHELRTPLt+Ir++ e+Ll + +el++eqr
CP000453_0 679 LKDEFVSMVSHELRTPLTSIRAFGEILLSN--------PELDAEQR- 716

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++ +e+erl rLin++Ldls+ie+g
CP000453_0 717 ----------KEFLQVVVKESERLTRLINQVLDLSKIESG 746

CP000453_1099: domain 1 of 1, from 206 to 272: score 89.5, E = 3.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ n+sHELRTPLt+I g ae+L e + ++++++
CP000453_1 206 MRRDFVGNVSHELRTPLTVIYGVAETLNE---------EMADDPEV- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ +++++er++rL++dlL lsr+e+g
CP000453_1 243 ----------GDMLRLLQEQSERMRRLVDDLLLLSRLETG 272

CP000453_2411: domain 1 of 1, from 290 to 356: score 85.1, E = 6.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI+g+a l+ + ++++q
CP000453_2 290 AKSVFLANMSHELRTPLNAILGFARLAGQ--------APQATPDQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l ++r +e+ll+Lind+Ld+++ie+g
CP000453_2 327 ----------REQLGFVERNGEHLLSLINDVLDMAKIESG 356

CP000453_1366: domain 1 of 1, from 273 to 339: score 70.2, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HEL TPL++I g ++ l+ d++ls++
CP000453_1 273 ALGRLSAGVAHELGTPLSVIDGQSQRGLR--------DPDLSPPA-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++i++e++r+++++++lLd+ r +g
CP000453_1 310 ----------SKAFRRIRSEVDRMSQIVQQLLDFGRPSNG 339

CP000453_2526: domain 1 of 1, from 307 to 373: score 70.2, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+PL+aI+ + +lL e +++lse++
CP000453_2 307 ALGRLTASIAHEIRNPLSAILHAGQLLAE--------SPDLSEDD-- 343

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++++r ++rl+ +++d+ +lsr +
CP000453_2 344 ----------RRLLDIVRRHGRRLNTIVEDVQQLSRRGRA 373

CP000453_0015: domain 1 of 1, from 129 to 186: score 66.0, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++++l+HE+++PL ++rg+a+lL++ el e++
CP000453_0 129 AIRELIRGLAHEIKNPLGGLRGAAQLLER----------ELAGEEL- 164

peLRledpeyreyletilreaerllrLindlL<-*
rey+++i++ea+rl++L++ lL
CP000453_0 165 ----------REYTQVIINEADRLQNLVDSLL 186

CP000453_1787: domain 1 of 1, from 220 to 288: score 65.2, E = 2.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl ++H+LR+PL ++ gy++lL+ e+ ++l+e q
CP000453_1 220 LKNRFLGVAAHDLRNPLGVLNGYIDLLRQEA------LGPLNEAQ-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ + aer+++L++dlLd s ie+g
CP000453_1 259 ----------QEVMGVMADVAERMSALVEDLLDVSAIESG 288

CP000453_1818: domain 1 of 1, from 456 to 526: score 54.0, E = 4.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI++ya+++ e+l+ g + + e
CP000453_1 456 LLGELTSGLAHELNQPLSAIIAYADAAAEQLE----GARATPGEV-- 496

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++++ +a+r + ++++ ++r + g
CP000453_1 497 ----------RRLLDKLIAQAQRASTVMQRVRAFARRDPG 526

CP000453_0670: domain 1 of 1, from 756 to 821: score 48.4, E = 1.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +P+t++ +a+ L++ e ++e +
CP000453_0 756 SIGRLAAGVAHEIGNPVTGVACLAQNLRD----------EDDPELI- 791

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re e il++++r+++++ l ++ +++
CP000453_0 792 ----------RESMEQILEQTHRISNIVHTLVSYAHAGST 821

CP000453_2135: domain 1 of 1, from 593 to 663: score 47.5, E = 2.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++ +++HE+++PL++I++++ ++++l k +e++ eq+
CP000453_2 593 TVGEMATGVAHEINQPLNVIKMASFNARRNLAK-----GEAGLEQV- 633

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+ ++er ++i++++ + r +
CP000453_2 634 ----------GKKLDRIIGQVERAAAIIQQMRVFGRKSDP 663

CP000453_1139: domain 1 of 1, from 245 to 303: score 46.2, E = 6.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l ++sH+L+TP+t +r+ ae+L +
CP000453_1 245 QRGRMLEAVSHDLKTPITRLRLRAEMLPD------------------ 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+ +r++ +++L+ Ld+ r +++
CP000453_1 274 ----------EALRERFQRDLAEMEQLVHSTLDFMRGDTP 303

CP000453_1682: domain 1 of 1, from 452 to 519: score 44.0, E = 2.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ ++L el+e ++
CP000453_1 452 ALGELTAGVAHEINNPTAVILGNMDVLIQ----------ELGEGVQP 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+ ++ i++++ r+++++++lL++sr +
CP000453_1 489 ---------VRREVDLIIEQVYRIRDIVDNLLQYSRPGDY 519

CP000453_2605: domain 1 of 1, from 498 to 570: score 40.4, E = 2.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+ +l +++ + +++e +
CP000453_2 498 AWGEVARRLAHEIKNPLTPIQLSAERLRHKL---SGRLEGRDAELL- 540

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ti r++ + +++n + +++r
CP000453_2 541 ----------ERSTGTIVRQVSAMKEMVNAFSEYARPPRL 570

CP000453_1629: domain 1 of 1, from 232 to 296: score 38.0, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++H+L TPL+++++ +e L++ + ++e +
CP000453_1 232 AIGTLAAGAAHQLGTPLSSMSMVVEELRD---------SREDDEAL- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++++++++ + + + +l ++ +++g
CP000453_1 269 ----------QEDLDILESQIQVCKQTLAEL--MEAAGNG 296

CP000453_1607: domain 1 of 1, from 328 to 396: score 36.8, E = 3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +l+HEL++PL a+++ya++ ++ l + + e +
CP000453_1 328 LMGQLSTTLAHELNQPLCALSTYAQASRRLL-------ARGDTEGL- 366

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le++++ a+r + +++++d++ +
CP000453_1 367 ----------GTALERLEQNAHRAAHTVRQIRDFAARQDL 396

CP000453_1992: domain 1 of 1, from 215 to 310: score 30.4, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldk....v.lagdtels
+ ++++a+++HEL++P++ + g+a +L+++l + ++ +++ +++
CP000453_1 215 SIGQLVAGVAHELNNPISFVVGNAFALKRYLGRleeyLgAIHRGVSA 261

eeqrlpeLR..l......edpeyreyletilreaerllrLindlLdlsri
eeq+ +LR++l+ + ed+ + +le + aer ++++ l ++
CP000453_1 262 EEQQ--RLRskLridyvlEDI--APLLEGTVEGAERTHDIVDALKRFAAV 307

eag<-*
+
CP000453_1 308 DRD 310

CP000453_0215: domain 1 of 1, from 270 to 336: score 27.7, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++++HE+++PL +++ ++ + + + ++++ +
CP000453_0 270 AIGRLTSGIAHEINNPLGGMLNALNTYKH---------HGAPDPFT- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ ++r + ++++++ lL +r+ +
CP000453_0 307 ----------LKTLSLVERGLLQIRDIVGALLVETRLKGE 336


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 4 0|=
-13 11 2|*=
-12 86 65|=======*==
-11 198 339|====================== *
-10 431 630|================================================ *
-9 527 650|==========================================================*
-8 508 487|======================================================*==
-7 392 307|==================================*=========
-6 285 176|===================*============
-5 169 96|==========*========
-4 92 51|=====*=====
-3 56 27|==*====
-2 38 14|=*===
-1 16 7|*=
0 15 3|*=
1 4 2|*
2 5 1|*
3 3 0|=
4 1 0|=
5 1 0|=
> 6 23 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 405.6286
P(chi-square) = 0

Total sequences searched: 2865

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: