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Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

4 accessions found for Arthrobacter sp. FB24  

Data for CP000454  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000454.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000454_0652 CDS_698193-696661 94.2 2.4e-26 1
CP000454_0116 CDS_120606-118906 80.1 2.4e-22 1
CP000454_0720 CDS_769622-770842 76.6 2.4e-21 1
CP000454_0780 CDS_848719-847280 75.6 4.5e-21 1
CP000454_0863 CDS_940292-938625 73.7 1.5e-20 1
CP000454_2689 CDS_3049731-3047926 72.4 3.5e-20 1
CP000454_3029 CDS_3422318-3420738 70.6 1.2e-19 1
CP000454_1435 CDS_1602094-1603335 70.5 1.3e-19 1
CP000454_1862 CDS_2114185-2116836 70.3 1.4e-19 1
CP000454_3768 CDS_4277962-4276235 57.6 5.8e-16 1
CP000454_1765 CDS_1988232-1986469 57.3 7e-16 1
CP000454_3705 CDS_4206210-4204975 52.6 1.5e-14 1
CP000454_0584 CDS_630193-628760 37.0 3.9e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000454_0652 1/1 271 337 .. 1 87 [] 94.2 2.4e-26
CP000454_0116 1/1 334 402 .. 1 87 [] 80.1 2.4e-22
CP000454_0720 1/1 148 214 .. 1 87 [] 76.6 2.4e-21
CP000454_0780 1/1 227 294 .. 1 87 [] 75.6 4.5e-21
CP000454_0863 1/1 336 402 .. 1 87 [] 73.7 1.5e-20
CP000454_2689 1/1 319 386 .. 1 87 [] 72.4 3.5e-20
CP000454_3029 1/1 293 361 .. 1 87 [] 70.6 1.2e-19
CP000454_1435 1/1 152 216 .. 1 87 [] 70.5 1.3e-19
CP000454_1862 1/1 621 689 .. 1 87 [] 70.3 1.4e-19
CP000454_3768 1/1 355 420 .. 1 87 [] 57.6 5.8e-16
CP000454_1765 1/1 344 411 .. 1 87 [] 57.3 7e-16
CP000454_3705 1/1 188 256 .. 1 87 [] 52.6 1.5e-14
CP000454_0584 1/1 235 300 .. 1 87 [] 37.0 3.9e-10

Alignments of top-scoring domains:
CP000454_0652: domain 1 of 1, from 271 to 337: score 94.2, E = 2.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++sHELRTPLtaIrgy+el+++ ++ +++
CP000454_0 271 KVRQFVADASHELRTPLTAIRGYTELMRM--------TEDFTPDG-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++++++er+ L++dlL l+r+++g
CP000454_0 308 ----------QKSLARVQSQSERMTTLVEDLLLLARLDEG 337

CP000454_0116: domain 1 of 1, from 334 to 402: score 80.1, E = 2.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++ HELRTPLt+I++y++++++++ ++ ++e
CP000454_0 334 AKTDFLATVNHELRTPLTSISAYLDMIQDGVG------GPVPPEV-- 372

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i r +erl+rLi+d+L+ sr +
CP000454_0 373 ----------SRMLDIIVRNSERLRRLIEDMLTVSRQDYD 402

CP000454_0720: domain 1 of 1, from 148 to 214: score 76.6, E = 2.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ aI+++ae+L+ ++ +ee +
CP000454_0 148 IRNDFVANVSHELKTPVGAISLLAEALES---------SADDEEAV- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++++e+ rl +L++d+ +lsr++
CP000454_0 185 ----------RRFAKRMQKESTRLAALVQDIIELSRLQGA 214

CP000454_0780: domain 1 of 1, from 227 to 294: score 75.6, E = 4.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL +Irg++el + ++l+ e+
CP000454_0 227 RMRRFAADASHELRTPLVTIRGFSELYRQ---------GALTKEE-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +i++ea+r+ ++++dlL l+r++++
CP000454_0 263 --------DVATAMGRIESEAKRMGSMVEDLLLLARLDEQ 294

CP000454_0863: domain 1 of 1, from 336 to 402: score 73.7, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+an+sHE+RTPLt+I+gy+elLl+ d++ +
CP000454_0 336 AKDDFVANVSHEFRTPLTSILGYVELLLD--------DHDGLRAPH- 373

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l +i+r aerll L++d L sr ++
CP000454_0 374 ----------REALMIIRRNAERLLGLVSD-LLASRSGQL 402

CP000454_2689: domain 1 of 1, from 319 to 386: score 72.4, E = 3.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPLt++r++ae+L + +++ ++
CP000454_2 319 MQQRFVSDVSHELRTPLTTVRMAAEVLYD-------ARHDFDPIN-- 356

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e +++++er ++L+ dlL++sr +ag
CP000454_2 357 ----------KRSAELLYNQVERFQSLLADLLEISRFDAG 386

CP000454_3029: domain 1 of 1, from 293 to 361: score 70.6, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sH+LRTPL++I+++++ L+ +d s+e+
CP000454_3 293 MRTSILRAVSHDLRTPLAGIKLAVSSLRQ-------EDVRFSPEDE- 331

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l ti+++a+rl++Li +lLd+sri a
CP000454_3 332 ----------RELLATIEDSADRLDHLIGNLLDMSRITAD 361

CP000454_1435: domain 1 of 1, from 152 to 216: score 70.5, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+++ +sH+LRTPL+++r++ae+L++ + +s+
CP000454_1 152 SRRELVSWISHDLRTPLASMRAMAEALED---------GMASDVS-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ++i+++++++ ++ndlL+ls+i+ag
CP000454_1 188 -----------GYYRKIISQTDQMAVMVNDLLELSKIQAG 216

CP000454_1862: domain 1 of 1, from 621 to 689: score 70.3, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sH+LRTPL++I++++ Ll +g t +ee+
CP000454_1 621 MRTSILRAVSHDLRTPLAGIKLAVGGLLQ------HGVTYTPEEE-- 659

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ti+ +a+rl+ L+ +lLd+sri a
CP000454_1 660 ----------RDLLQTIDACADRLDLLVGNLLDMSRISAD 689

CP000454_3768: domain 1 of 1, from 355 to 420: score 57.6, E = 5.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+a++sHELRTPLt+I+gy+el + e + e++
CP000454_3 355 AKDNFVATVSHELRTPLTSILGYLELVID----------EPGHEDI- 390

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++r a +ll L+ndl + +
CP000454_3 391 ----------QAELRIVERNAVYLLGLVNDLIAVASESVE 420

CP000454_1765: domain 1 of 1, from 344 to 411: score 57.3, E = 7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+an+sHE+RTPL +I+gy++l l++ +e ++ q+
CP000454_1 344 LKDDFVANISHEFRTPLMSILGYLDLVLDG--------EEETAGQH- 381

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +++ ae ll+L++ lL+ s g
CP000454_1 382 ----------ELFLGMAQNNAEKLLNLVSGLLTVSSDSMG 411

CP000454_3705: domain 1 of 1, from 188 to 256: score 52.6, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ +sH+LR PLt+I+gy+el ++ ++ +++ +
CP000454_3 188 KLADFAGRVSHDLRIPLTTILGYVELSED-------DEDIRPDSPA- 226

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yle+i+ +++r+l++++d+L +s+ +
CP000454_3 227 ----------AGYLERIRGSGRRMLSMLDDVLSYSQVGGM 256

CP000454_0584: domain 1 of 1, from 235 to 300: score 37.0, E = 3.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+ sH+LR+P+ a+r+ ++lL+ + +++ +
CP000454_0 235 SQRQLIADTSHQLRNPVGALRLRIDLLQL---------ELQTARE-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +l e+er +++++ +L l+ +e+
CP000454_0 271 ----------HNAAAGVLAELERVEEILDGVLKLATAEHR 300


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 8 0|=
-13 32 3|*==
-12 148 94|======*===
-11 370 491|========================= *
-10 730 911|================================================= *
-9 836 941|======================================================== *
-8 783 704|==============================================*======
-7 480 444|=============================*==
-6 328 255|================*=====
-5 192 140|=========*===
-4 106 75|====*===
-3 68 39|==*==
-2 32 20|=*=
-1 11 10|*
0 4 5|*
1 1 2|*
2 1 1|*
3 1 0|=
4 1 0|=
5 0 0|
> 6 14 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 198.1238
P(chi-square) = 1.823e-36

Total sequences searched: 4146

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: