hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000455.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000455_0155 CDS_155993-157447 47.9 1.2e-14 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000455_0155 1/1 248 313 .. 1 87 [] 47.9 1.2e-14
Alignments of top-scoring domains:
CP000455_0155: domain 1 of 1, from 248 to 313: score 47.9, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELR PL+++++ +e++ + ++s +
CP000455_0 248 EQRRFVSDASHELRSPLATLSAGVEIAAA----------DASGAT-- 282
peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++ e+ r++ L++dlL+l++ g
CP000455_0 283 ---------WEHMKTVLAGETARMRYLVEDLLTLAKTNDG 313
Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 13 3|==*==========
-11 20 18|=================*==
-10 31 34|=============================== *
-9 30 35|============================== *
-8 27 26|=========================*=
-7 15 16|===============*
-6 12 9|========*===
-5 2 5|== *
-4 1 2|=*
-3 2 1|*=
-2 2 0|==
> -1 3 -|===
% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 2.1976
P(chi-square) = 0.8212
Total sequences searched: 158
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
