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Classification of phyla is from NCBI page
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76 projects found  

4 accessions found for Burkholderia cenocepacia HI2424  

Data for CP000460  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000460.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000460_0585 CDS_671078-673384 73.8 3.2e-21 1
CP000460_0458 CDS_512169-513629 72.4 7.9e-21 1
CP000460_0402 CDS_447333-448847 65.1 9.6e-19 1
CP000460_0120 CDS_130943-133285 55.9 3.9e-16 1
CP000460_0070 CDS_70521-69400 54.8 7.6e-16 1
CP000460_0570 CDS_654794-652464 52.0 4.7e-15 1
CP000460_0095 CDS_94292-93015 43.2 1.6e-12 1
CP000460_0865 CDS_978579-977050 43.1 1.6e-12 1
CP000460_0072 CDS_73915-72080 34.7 3.9e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000460_0585 1/1 393 458 .. 1 87 [] 73.8 3.2e-21
CP000460_0458 1/1 262 328 .. 1 87 [] 72.4 7.9e-21
CP000460_0402 1/1 273 341 .. 1 87 [] 65.1 9.6e-19
CP000460_0120 1/1 446 510 .. 1 87 [] 55.9 3.9e-16
CP000460_0070 1/1 151 216 .. 1 87 [] 54.8 7.6e-16
CP000460_0570 1/1 404 470 .. 1 87 [] 52.0 4.7e-15
CP000460_0095 1/1 212 270 .. 1 87 [] 43.2 1.6e-12
CP000460_0865 1/1 288 352 .. 1 87 [] 43.1 1.6e-12
CP000460_0072 1/1 348 449 .. 1 87 [] 34.7 3.9e-10

Alignments of top-scoring domains:
CP000460_0585: domain 1 of 1, from 393 to 458: score 73.8, E = 3.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ t + q
CP000460_0 393 LKDELLATVSHELRTPLNVIYGWIEVLRN---------TGDHALQ-- 428

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l r++ d+Ld s + +g
CP000460_0 429 ----------HQAIDAIDRSARSLTRMVGDILDASSLATG 458

CP000460_0458: domain 1 of 1, from 262 to 328: score 72.4, E = 7.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f a+l+H+LRTPL+ +rg++e++l+ ++s ++
CP000460_0 262 HLSQFSADLAHDLRTPLNNMRGATEVALA---------RPRSVDE-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +le+ l+e +rl r+i+++L l+r+e++
CP000460_0 298 ---------YQTLLESNLEEYDRLARMIENVLFLARAEHP 328

CP000460_0402: domain 1 of 1, from 273 to 341: score 65.1, E = 9.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ n+sH+LRTPLt++ gy+e+L ++ ++l e++r
CP000460_0 273 QRRELITNISHDLRTPLTSLHGYLETLSLKA-------DTLAEPER- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++l ++ rL + l +l+r+e+g
CP000460_0 312 ----------RRYLSIALAQSAKVGRLAQALFELARLESG 341

CP000460_0120: domain 1 of 1, from 446 to 510: score 55.9, E = 3.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k e l ++sH+LR PL++I gya+lLle ++ q
CP000460_0 446 QKIETLGYVSHDLRAPLSTINGYAKLLLE----------GATRGQ-- 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r++++ l+Li++lL ++++e +
CP000460_0 481 ----------ARLIRSIDRSIRYQLALIDELLAFTKAELQ 510

CP000460_0070: domain 1 of 1, from 151 to 216: score 54.8, E = 7.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +l +lsH++RTPL +I+++a+ L + +++ee
CP000460_0 151 ARNLLLGMLSHDMRTPLQTIQLTASYLAA---------LNAGEEV-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +++r++ r++ L++dl d+ r + g
CP000460_0 187 ----------SEAAARLIRSGGRMQGLLDDLCDFNRTQLG 216

CP000460_0570: domain 1 of 1, from 404 to 470: score 52.0, E = 4.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f+a+l+HELR+ L+ +r + +L+ + +++ +
CP000460_0 404 RLSVFIAMLAHELRNHLAPLRNSVGVLQS---------LPDPAPVL- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + + r++ +l rL++dlLd ri ag
CP000460_0 441 ----------AQCRDAVNRQVAQLTRLVDDLLDVGRITAG 470

CP000460_0095: domain 1 of 1, from 212 to 270: score 43.2, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+++H+LRTP+t ++ a+lL +
CP000460_0 212 ERAVMLASIAHDLRTPITRMQVRADLLTD------------------ 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e lr++e+++r i ++Ld++r +
CP000460_0 241 ----------RGDREGFLRDTESMSRVITQFLDFAREIPE 270

CP000460_0865: domain 1 of 1, from 288 to 352: score 43.1, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a ++HE+R+P+ a+r+ ae +l+ + q
CP000460_0 288 MLGKLAAQVAHEIRNPMGAMRLKAENALA----------GDGRRQ-- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++il ++er++++++ lL l++ +
CP000460_0 323 ----------QDALRVILAQIERIDAQLSSLLALTQPVRP 352

CP000460_0072: domain 1 of 1, from 348 to 449: score 34.7, E = 3.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldk....v.lagdtels
+ ++++a+++HE+++P+ +++++ +L++++ ++ +v +a++++l+
CP000460_0 348 SIGQLAAGVAHEINNPIGFVSANLNTLKTWV-RslldVvAAHEAALP 393

eeqrlpeLR..l..........edp.eyreyletilreaerllrLindlL
+ p+ R+ l+ ++ + + +++e++ +++ ++ a r +r+++dl+
CP000460_0 394 QLD--PATRdaLtavhravdldYVRdEIAMLIDESIDGALRVRRIVQDLR 441

dlsrieag<-*
d+sr +
CP000460_0 442 DFSRPASD 449


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-13 6 0|==
-12 39 20|====*=====
-11 80 108|==================== *
-10 149 201|====================================== *
-9 183 208|============================================== *
-8 163 156|======================================*==
-7 129 98|========================*========
-6 78 56|=============*======
-5 48 31|=======*====
-4 11 16|===*
-3 11 8|=*=
-2 10 4|*==
> -1 11 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 69.6988
P(chi-square) = 1.744e-11

Total sequences searched: 918

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: