Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Aeromonas hydrophila subsp. hydrophila ATCC 7966  

Data for CP000462  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000462.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000462_1536 CDS_1732589-1730877 71.8 7.3e-21 1
CP000462_2720 CDS_3141028-3142548 51.6 6.6e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000462_1536 1/1 367 435 .. 1 70 [] 71.8 7.3e-21
CP000462_2720 1/1 306 371 .. 2 70 .] 51.6 6.6e-15

Alignments of top-scoring domains:
CP000462_1536: domain 1 of 1, from 367 to 435: score 71.8, E = 7.3e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ERa IARELHDs++Q+Ls +k+q+ l++r + +k + +a++a+++
CP000462_1 367 ERAVIARELHDSLAQALSYLKIQSTLLKRFF--AKGDTvKAEAAMQQ 411

irelarealaevRrllgdLRpaal<-*
i e + a++++R+llg++R ++
CP000462_1 412 IDEGLGSAYTQLRELLGTFRLSIG 435

CP000462_2720: domain 1 of 1, from 306 to 371: score 51.6, E = 6.6e-15
*->RaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdeir
R+ ARELHD +gQ+++ai+ q++ +rrl+ d++ + + + i+
CP000462_2 306 RKEVARELHDDIGQTITAIRTQAGIVRRLA---PDNAGVGQSSALIE 349

elarealaevRrllgdLRpaal<-*
+l+ ++ vR llg+LRp +l
CP000462_2 350 TLSLGIYDAVRGLLGRLRPRQL 371


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-16 1 0|=
-15 1 0|=
-14 21 0|==
-13 45 0|====
-12 124 46|===*=====
-11 165 377|============ *
-10 544 876|======================================= *
-9 809 995|==========================================================*
-8 636 767|============================================== *
-7 531 482|==================================*===
-6 422 272|===================*===========
-5 343 146|==========*==============
-4 180 76|=====*=======
-3 120 39|==*======
-2 66 20|=*===
-1 36 10|*==
0 29 5|*==
1 19 2|*=
2 9 1|*
3 7 0|=
4 5 0|=
5 1 0|=
6 4 0|=
> 7 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1370.4919
P(chi-square) = 0

Total sequences searched: 4122

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: