Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Rhodopseudomonas palustris BisA53  

Data for CP000463  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000463.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000463_2967 CDS_3355277-3356383 111.0 2.6e-31 1
CP000463_2990 CDS_3379395-3378196 100.2 3.1e-28 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000463_2967 1/1 161 244 .. 1 94 [] 111.0 2.6e-31
CP000463_2990 1/1 205 286 .. 1 94 [] 100.2 3.1e-28

Alignments of top-scoring domains:
CP000463_2967: domain 1 of 1, from 161 to 244: score 111.0, E = 2.6e-31
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E++HRV N+LQ+I+SLL LQa +++ ++v ++aL + +RV++
CP000463_2 161 EVNHRVGNSLQIIASLLHLQASSSQQPDV-----KAALTNAMGRVAA 202

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++H++LY+s dl++v + +Yle L+e+L++s+++ + l
CP000463_2 203 VAQVHRRLYTSHDLKSVLLNQYLEALLEDLRRSAQGNRMSR-----L 244

CP000463_2990: domain 1 of 1, from 205 to 286: score 100.2, E = 3.1e-28
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+ HRVKN+L+ + +LLr Qa ++++ ev ++aL+++ RV +
CP000463_2 205 EMSHRVKNSLASVVGLLRVQANSTQSDEV-----KAALQDASARVET 246

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++H++L+++ ++++++ +++++L++ L+ ++++ +
CP000463_2 247 IAQVHDHLWRGAQIGSIELVDFMTELCKRLRGTMQGHTL-------I 286


Histogram of all scores:
score obs exp (one = represents 23 sequences)
----- --- ---
-15 5 0|=
-14 32 0|==
-13 91 30|=*==
-12 352 320|=============*==
-11 1315 892|======================================*===================
-10 1023 1154|============================================= *
-9 756 975|================================= *
-8 559 654|========================= *
-7 303 388|============== *
-6 232 216|=========*=
-5 86 116|==== *
-4 51 61|==*
-3 32 32|=*
-2 15 16|*
-1 15 8|*
0 1 4|*
1 1 2|*
> 2 9 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 435.6765
P(chi-square) = 0

Total sequences searched: 4878

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: