Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Rhodopseudomonas palustris BisA53  

Data for CP000463  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP000463.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000463_1735 CDS_1944761-1946416 126.1 1.1e-42 1
CP000463_3623 CDS_4087217-4086465 110.1 3e-37 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000463_1735 1/1 346 424 .. 1 85 [] 126.1 1.1e-42
CP000463_3623 1/1 58 140 .. 1 85 [] 110.1 3e-37

Alignments of top-scoring domains:
CP000463_1735: domain 1 of 1, from 346 to 424: score 126.1, E = 1.1e-42
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
ELnHRVKN+LAv+QSi++ TlR +++d ++e ++gR++A+s++ +L
CP000463_1 346 ELNHRVKNILAVIQSIVTRTLRDGTDIDTARELLIGRIHAMSNVVSL 392

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
Lt+s+W+g++Lr Lle+ P+ a+Ri + GPd
CP000463_1 393 --LTDSQWQGVRLRGLLESRAIPH----ADRIAVNGPD 424

CP000463_3623: domain 1 of 1, from 58 to 140: score 110.1, E = 3e-37
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
EL+HR+ NtLA+V +ia Q+lRna s++++++a++gRLqAL+raH+L
CP000463_3 58 ELHHRIQNTLATVGAIASQSLRNASSIEHAKTAIEGRLQALGRAHNL 104

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
L +++W +A L +++ + ++++ +d +R+ ++GPd
CP000463_3 105 --LLQAQWTSALLEMVIRTATEAFDNADLHRVSIEGPD 140


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 1 0|=
-14 9 0|=
-13 74 0|=====
-12 398 0|===========================
-11 482 39|==*==============================
-10 773 504|=================================*==================
-9 825 1248|======================================================= *
-8 839 1296|======================================================== *
-7 607 870|========================================= *
-6 361 475|========================= *
-5 232 235|===============*
-4 124 111|=======*=
-3 60 51|===*
-2 33 23|=*=
-1 19 10|*=
0 18 4|*=
1 8 2|*
2 3 1|*
3 4 0|=
4 1 0|=
5 1 0|=
6 1 0|=
> 7 5 -|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 5471.1616
P(chi-square) = 0

Total sequences searched: 4878

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: