Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Shewanella sp. ANA-3  

Data for CP000469  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000469.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000469_3397 CDS_4094965-4089662 103.2 6.6e-29 1
CP000469_0570 CDS_671854-675564 97.9 2.1e-27 1
CP000469_1099 CDS_1305223-1302416 92.5 7.2e-26 1
CP000469_3314 CDS_4000647-3997279 90.2 3.2e-25 1
CP000469_3988 CDS_4826318-4821438 87.1 2.4e-24 1
CP000469_0476 CDS_557774-562834 84.6 1.2e-23 1
CP000469_2001 CDS_2402165-2405524 80.8 1.5e-22 1
CP000469_2860 CDS_3443544-3442246 77.7 1.1e-21 1
CP000469_1043 CDS_1232211-1235264 72.5 3.5e-20 1
CP000469_0060 CDS_71666-70620 68.0 6.4e-19 1
CP000469_0257 CDS_291530-290484 61.7 3.9e-17 1
CP000469_1328 CDS_1551942-1553024 53.7 6.9e-15 1
CP000469_2397 CDS_2892852-2895011 51.0 4.2e-14 1
CP000469_3164 CDS_3823521-3824789 50.5 5.9e-14 1
CP000469_0250 CDS_285323-283974 50.2 6.8e-14 1
CP000469_3990 CDS_4827452-4828768 48.5 2.1e-13 1
CP000469_2506 CDS_3019182-3015742 48.1 2.8e-13 1
CP000469_1872 CDS_2232915-2234309 47.9 3e-13 1
CP000469_4047 CDS_4898744-4896609 47.0 5.7e-13 1
CP000469_0537 CDS_636365-638524 46.4 8.5e-13 1
CP000469_1402 CDS_1638629-1636818 43.4 5.8e-12 1
CP000469_3287 CDS_3969838-3971067 41.9 1.6e-11 1
CP000469_3438 CDS_4150524-4146997 40.5 3.9e-11 1
CP000469_2184 CDS_2642006-2640081 34.8 1.6e-09 1
CP000469_0629 CDS_749138-751126 32.9 5.6e-09 1
CP000469_0281 CDS_316368-317603 30.6 2.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000469_3397 1/1 1039 1104 .. 1 87 [] 103.2 6.6e-29
CP000469_0570 1/1 721 786 .. 1 87 [] 97.9 2.1e-27
CP000469_1099 1/1 300 365 .. 1 87 [] 92.5 7.2e-26
CP000469_3314 1/1 542 607 .. 1 87 [] 90.2 3.2e-25
CP000469_3988 1/1 899 964 .. 1 87 [] 87.1 2.4e-24
CP000469_0476 1/1 962 1027 .. 1 87 [] 84.6 1.2e-23
CP000469_2001 1/1 497 562 .. 1 87 [] 80.8 1.5e-22
CP000469_2860 1/1 205 271 .. 1 87 [] 77.7 1.1e-21
CP000469_1043 1/1 507 572 .. 1 87 [] 72.5 3.5e-20
CP000469_0060 1/1 127 195 .. 1 87 [] 68.0 6.4e-19
CP000469_0257 1/1 126 191 .. 1 87 [] 61.7 3.9e-17
CP000469_1328 1/1 136 202 .. 1 87 [] 53.7 6.9e-15
CP000469_2397 1/1 498 563 .. 1 87 [] 51.0 4.2e-14
CP000469_3164 1/1 200 269 .. 1 87 [] 50.5 5.9e-14
CP000469_0250 1/1 235 297 .. 1 87 [] 50.2 6.8e-14
CP000469_3990 1/1 233 293 .. 1 87 [] 48.5 2.1e-13
CP000469_2506 1/1 783 849 .. 1 87 [] 48.1 2.8e-13
CP000469_1872 1/1 249 315 .. 1 87 [] 47.9 3e-13
CP000469_4047 1/1 467 534 .. 1 87 [] 47.0 5.7e-13
CP000469_0537 1/1 496 564 .. 1 87 [] 46.4 8.5e-13
CP000469_1402 1/1 378 446 .. 1 87 [] 43.4 5.8e-12
CP000469_3287 1/1 189 250 .. 1 87 [] 41.9 1.6e-11
CP000469_3438 1/1 784 849 .. 1 87 [] 40.5 3.9e-11
CP000469_2184 1/1 265 344 .. 1 87 [] 34.8 1.6e-09
CP000469_0629 1/1 429 498 .. 1 87 [] 32.9 5.6e-09
CP000469_0281 1/1 201 265 .. 1 87 [] 30.6 2.6e-08

Alignments of top-scoring domains:
CP000469_3397: domain 1 of 1, from 1039 to 1104: score 103.2, E = 6.6e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l t+l+ +q
CP000469_3 1039 AKGDFLANMSHEIRTPMNAIIGMSQLCLQ---------TALDKKQ-- 1074

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+r++++ll++ind+Ld+s+ieag
CP000469_3 1075 ----------KNYVEKIERASKSLLSIINDILDFSKIEAG 1104

CP000469_0570: domain 1 of 1, from 721 to 786: score 97.9, E = 2.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP000469_0 721 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTAQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++ +a++llr+ind+Ld+s+ieag
CP000469_0 757 ----------KDYLEKAGFSAQSLLRIINDILDFSKIEAG 786

CP000469_1099: domain 1 of 1, from 300 to 365: score 92.5, E = 7.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
CP000469_1 300 IKSEFLANMSHELRTPLNGVIGFARQLVK---------TPLHSSQ-- 335

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll++ind+Ld+s++eag
CP000469_1 336 ----------VDYINTIERSATNLLAIINDILDFSKLEAG 365

CP000469_3314: domain 1 of 1, from 542 to 607: score 90.2, E = 3.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ flan+sHE+RTP++aI+g++++Lle + l+ eq
CP000469_3 542 ARAAFLANMSHEIRTPMNAIIGFSDILLE---------SVLDLEQ-- 577

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ti r+a++ll+L+nd+Ld ++++ g
CP000469_3 578 ----------QKQLSTINRSAKSLLHLLNDVLDSAKLDKG 607

CP000469_3988: domain 1 of 1, from 899 to 964: score 87.1, E = 2.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++a++g+++l++ t+ls +q
CP000469_3 899 AKSAFLANMSHEIRTPMNAVLGMLQLMQY---------TALSVQQ-- 934

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+ +++ +a++ll L+nd+Ld+s+i+ag
CP000469_3 935 ----------QGYVTKAQTAAKSLLGLLNDILDFSKIDAG 964

CP000469_0476: domain 1 of 1, from 962 to 1027: score 84.6, E = 1.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g++ l l tels++q
CP000469_0 962 AKSDFLANMSHEIRTPMNAILGMSYLVLQ---------TELSSKQ-- 997

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+ +++++a +ll ++nd+Ld+s+iea+
CP000469_0 998 ----------RDYVGKVHQAAGSLLGILNDILDFSKIEAE 1027

CP000469_2001: domain 1 of 1, from 497 to 562: score 80.8, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sHE+R PL+aI+g +elLl+ + ls +q
CP000469_2 497 VKSRFLATMSHEIRSPLNAILGGVELLLD---------SSLSKDQ-- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++++++ ll+ ind+Ld+s+ieag
CP000469_2 533 ----------RIHANIAREAGSALLHTINDILDFSKIEAG 562

CP000469_2860: domain 1 of 1, from 205 to 271: score 77.7, E = 1.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ a+ + ++++
CP000469_2 205 MRKEFVANVSHELKTPLTVLQGYLEMMQS-----MAEPGSMNAKP-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++++++r+++++++lL lsrie
CP000469_2 245 -------------LALMQQQTRRMQSMVEQLLVLSRIEDA 271

CP000469_1043: domain 1 of 1, from 507 to 572: score 72.5, E = 3.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++++g++ lL + l++ q
CP000469_1 507 AKSQFLATMSHEIRTPLNGLLGTLTLLGH---------SQLPPAQ-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ ++d+Ld+sr+e+g
CP000469_1 543 ----------QQMLALSQYSGTLLQTVLSDILDFSRLEQG 572

CP000469_0060: domain 1 of 1, from 127 to 195: score 68.0, E = 6.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L+e++ ++ls++q+
CP000469_0 127 LRNSILLSVSHDLRTPLATIIGTLTTLKEYQ-------AKLSPKQN- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++++ e++rl + i++lL+ +++++g
CP000469_0 166 ----------EELIDSAAAESHRLHQYIENLLQATKLQHG 195

CP000469_0257: domain 1 of 1, from 126 to 191: score 61.7, E = 3.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el+++ +
CP000469_0 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELDDPAQ- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ i+++a+rl++L+++lL r +
CP000469_0 162 ----------KEFTNLIIEQADRLRSLVDRLLGPQRPTQH 191

CP000469_1328: domain 1 of 1, from 136 to 202: score 53.7, E = 6.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya L ++lse +
CP000469_1 136 ALGKMVATLAHQVRTPLSAALLYAANLAS---------PKLSESAK- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ + ++ l+r++nd+L +++ ++
CP000469_1 173 ----------AKFQQKLVDRLNELERQVNDMLLMAKGRQD 202

CP000469_2397: domain 1 of 1, from 498 to 563: score 51.0, E = 4.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L ++l+ ++
CP000469_2 498 YLENMSSRLSHELRTPVAVVRSSLEHLNL---------QTLDKDT-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
CP000469_2 534 ----------QKYVDRAQEGVSRLSMILNNMSEATRLEQS 563

CP000469_3164: domain 1 of 1, from 200 to 269: score 50.5, E = 5.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ ++ ++ s+eq++
CP000469_3 200 NQKHLSNAVSHEIRTPLARLKFALALMPMYC-------QPDSDEQKR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ +++L+++lL+++ +ea+
CP000469_3 240 ----------QDFLNEMQLDIKEMENLLQELLTYASLEAQ 269

CP000469_0250: domain 1 of 1, from 235 to 297: score 50.2, E = 6.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++ + l+++ + ++ e+
CP000469_0 235 NQQRLMGDISHELRTPLTRLQLSLALARK--------KGQQTTET-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i eae+l++Li +lL+lsr
CP000469_0 272 --------------DRIAYEAEQLEKLIAELLELSRVKLS 297

CP000469_3990: domain 1 of 1, from 233 to 293: score 48.5, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000469_3 233 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++i+++ + r +++
CP000469_3 264 ----------QYLKDGIVNDIEDMDAIISQFIAYIRQDQE 293

CP000469_2506: domain 1 of 1, from 783 to 849: score 48.1, E = 2.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000469_2 783 SKSRFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDREA-- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP000469_2 820 ----------RTTLSHVNSSLKTAGELLTDLLDISKLDSG 849

CP000469_1872: domain 1 of 1, from 249 to 315: score 47.9, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL+TPL++I+++ + L+ + +e ++e
CP000469_1 249 RERRFSADAAHELKTPLSVIKLHQQGLEGLV-------GEGDAER-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i+ ++++++ +++lL l+r ++
CP000469_1 287 -----------IHLAAIDAGVKHMSHTVEQLLLLARVDSI 315

CP000469_4047: domain 1 of 1, from 467 to 534: score 47.0, E = 5.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ elL+ el ++e +
CP000469_4 467 ALGELTAGIAHEINNPTAVILGNMELLRYEL--------GDNAESV- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
CP000469_4 505 ----------KEEIDLVIQQVGRISTIIRSLLQYSRPGEF 534

CP000469_0537: domain 1 of 1, from 496 to 564: score 46.4, E = 8.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I +++ L e+l +++++e
CP000469_0 496 ELDQFAYIASHDLKSPLRGIEQLTSWLSEDL------SENMDENV-- 534

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++ ++r+ L++ lL +sri+
CP000469_0 535 ----------QKYLGLIQSRIQRMVLLLDGLLMFSRIGRV 564

CP000469_1402: domain 1 of 1, from 378 to 446: score 43.4, E = 5.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HEL++PL+a+r ya+ +++l +++++
CP000469_1 378 VIGSLSASINHELNQPLAALRSYAQNTQTFLA------RNMPDKA-- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i++ ++rl +++ ++ ++r +g
CP000469_1 417 ----------SDNLKIIIELTDRLADIVGQFKSFTRKSQG 446

CP000469_3287: domain 1 of 1, from 189 to 250: score 41.9, E = 1.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e+ +++sHE RTPL+ +r+++e+++ + d
CP000469_3 189 MHKELSRTISHEVRTPLARMRFALEIIRPQID--------------- 220

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +++ ++++ +++L + L ++r+e+
CP000469_3 221 ----------ANYANRLNEDIDDIEQLAANYLSFARLEHK 250

CP000469_3438: domain 1 of 1, from 784 to 849: score 40.5, E = 3.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +P +a+ +++e+L+ ++ ++
CP000469_3 784 SKTRFLAAASHDLMQPFNALTLFTEMLKQ----------RVTSTEL- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+ +++ ++L++dl ++sr+++
CP000469_3 820 ----------KDLATHIEASLNVVESLLSDLVEISRLDSS 849

CP000469_2184: domain 1 of 1, from 265 to 344: score 34.8, E = 1.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +la++ HE+RTP++a++gy++lL++ + e q
CP000469_2 265 SKLALLASINHEIRTPINALLGYSKLLKK--------TLSRQEAQ-- 301

peLRl.....edpeyreyletilreaerllrLindlLdlsrieag<-*
LRl++ ++ed ++++++ +a+ l + ++ L +s++e g
CP000469_2 302 --LRLhhaeqEDKALSTIVDKMIWSANLLYSVAENTLNYSKAEVG 344

CP000469_0629: domain 1 of 1, from 429 to 498: score 32.9, E = 5.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ a+lsHEL++PL+aI y++ ++ +l ++++ +ee
CP000469_0 429 IAGELGASLSHELNQPLAAIGHYCHGAEVRL-----QRGTSPEEL-- 468

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i++e+ r +++i++l+ l + +
CP000469_0 469 ----------QSVLTLIQQEVSRADSIISRLRNLLKKRPV 498

CP000469_0281: domain 1 of 1, from 201 to 265: score 30.6, E = 2.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ Ir +e L +++ +e se
CP000469_0 201 AVRGVTDNIAHDLRTPLSHIRIGLEELAAKS------PDEISEGC-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e++++l+ + +L l+rie+g
CP000469_0 240 --------------AILTEELDHCLATFDAMLSLTRIEEG 265


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 1 0|=
-14 5 0|=
-13 45 3|*===
-12 164 93|======*=====
-11 364 487|========================== *
-10 673 904|================================================= *
-9 813 933|==========================================================*
-8 707 698|=================================================*=
-7 542 440|===============================*=======
-6 301 253|==================*===
-5 214 139|=========*======
-4 94 74|=====*=
-3 64 39|==*==
-2 35 20|=*=
-1 28 10|*=
0 12 5|*
1 5 2|*
2 4 1|*
3 2 0|=
4 1 0|=
5 0 0|
6 0 0|
> 7 37 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 296.1530
P(chi-square) = 0

Total sequences searched: 4111

Whole sequence top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: