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Classification of phyla is from NCBI page
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106 projects found  

3 accessions found for Arthrobacter aurescens TC1  

Data for CP000474  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000474.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000474_0768 CDS_836138-834642 93.8 3e-26 1
CP000474_3097 CDS_3550671-3554132 92.8 5.7e-26 1
CP000474_0855 CDS_939444-940670 77.2 1.6e-21 1
CP000474_2578 CDS_2969063-2967075 74.6 8.6e-21 1
CP000474_1510 CDS_1722068-1723321 73.7 1.6e-20 1
CP000474_1027 CDS_1146892-1145267 73.6 1.6e-20 1
CP000474_3102 CDS_3558861-3560504 73.1 2.3e-20 1
CP000474_2895 CDS_3303055-3301520 66.2 2e-18 1
CP000474_3789 CDS_4316391-4317620 58.9 2.3e-16 1
CP000474_0697 CDS_756631-755216 40.2 4.6e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000474_0768 1/1 273 339 .. 1 87 [] 93.8 3e-26
CP000474_3097 1/1 477 542 .. 1 87 [] 92.8 5.7e-26
CP000474_0855 1/1 130 196 .. 1 87 [] 77.2 1.6e-21
CP000474_2578 1/1 379 446 .. 1 87 [] 74.6 8.6e-21
CP000474_1510 1/1 159 223 .. 1 87 [] 73.7 1.6e-20
CP000474_1027 1/1 322 388 .. 1 87 [] 73.6 1.6e-20
CP000474_3102 1/1 317 385 .. 1 87 [] 73.1 2.3e-20
CP000474_2895 1/1 274 342 .. 1 87 [] 66.2 2e-18
CP000474_3789 1/1 193 261 .. 1 87 [] 58.9 2.3e-16
CP000474_0697 1/1 235 300 .. 1 87 [] 40.2 4.6e-11

Alignments of top-scoring domains:
CP000474_0768: domain 1 of 1, from 273 to 339: score 93.8, E = 3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++sHELRTPLtaIrgy+elL++ ++ +e+
CP000474_0 273 KVRQFVADASHELRTPLTAIRGYTELLRM--------TENFTEDG-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l ++++++er+ L++dlL l+r+++g
CP000474_0 310 ----------RKSLARVQSQSERMTTLVEDLLLLARLDEG 339

CP000474_3097: domain 1 of 1, from 477 to 542: score 92.8, E = 5.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla++sHE+RTPL+a++g+++l+ + t+lse q
CP000474_3 477 LKSEFLATMSHEIRTPLNAVIGLTSLMMD---------TPLSEGQ-- 512

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y + ++ ++e ll Lind+Ld+s++eag
CP000474_3 513 ----------RQYAQGVKGAGEVLLTLINDILDFSKLEAG 542

CP000474_0855: domain 1 of 1, from 130 to 196: score 77.2, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ aI+++ae+L++ ++ +ee +
CP000474_0 130 IRNDFVANVSHELKTPVGAISLLAEALEA---------SPDDEEAV- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++++e+ rl +L++d+ +lsr++
CP000474_0 167 ----------RRFAKRMHKESGRLAALVQDIIELSRLQGA 196

CP000474_2578: domain 1 of 1, from 379 to 446: score 74.6, E = 8.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPLt++r++ae+L + +++ ++
CP000474_2 379 MQQRFVSDVSHELRTPLTTVRMAAEVLFD-------AREDFDPMN-- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e +++++er ++L++dlL++sr +ag
CP000474_2 417 ----------KRSAELLYHQVERFQSLLSDLLEISRFDAG 446

CP000474_1510: domain 1 of 1, from 159 to 223: score 73.7, E = 1.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+++ +sH+LRTPL+++r+++e+L++ + +s+ q
CP000474_1 159 ARRELVSWISHDLRTPLASMRAMTEALED---------GMASDVQ-- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ++i+ ++e++ +++ndlL+ls+i+ag
CP000474_1 195 -----------GYYRKIIGQTEQMTAMVNDLLELSKIQAG 223

CP000474_1027: domain 1 of 1, from 322 to 388: score 73.6, E = 1.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+an+sHE+RTPLt+I+gy+el+l+ d+++ + +
CP000474_1 322 AKDDFVANVSHEFRTPLTSILGYVELILD--------DPDALDARA- 359

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++++r aerll L++d L r ++
CP000474_1 360 ----------RKQLDIVRRNAERLLTLVSD-LLVVRSGQI 388

CP000474_3102: domain 1 of 1, from 317 to 385: score 73.1, E = 2.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++ HELRTPLt+I +y++++++ + ++
CP000474_3 317 AKTDFLATVNHELRTPLTSITAYLDMIQD---------GSGGPVP-- 352

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++r++l++i r ++rl+rLi+d+L+ s +
CP000474_3 353 -------EGIRKMLDVIARNSDRLRRLIEDMLTVSMQDGS 385

CP000474_2895: domain 1 of 1, from 274 to 342: score 66.2, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sH+LRTPL++I+++++ L+ +d +++
CP000474_2 274 MRTSILRAVSHDLRTPLAGIKLAVSSLRQ-------EDVSFPPDVE- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+leti++ a+rl++L+++lLd+sri a
CP000474_2 313 ----------RELLETIEEYADRLDHLVDNLLDMSRITAD 342

CP000474_3789: domain 1 of 1, from 193 to 261: score 58.9, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ +sH+LR PLt+I+gy+el ++ d++ + ++
CP000474_3 193 KLAAFAGRVSHDLRVPLTTILGYVELVED--------DPDVEPASTA 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i ++++r+l +++d+L +sr +
CP000474_3 232 ----------AKYLDRIGSSGRRMLGMLEDVLSYSRVGGA 261

CP000474_0697: domain 1 of 1, from 235 to 300: score 40.2, E = 4.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+ sH+LR+P+ a+r+ ++lL+ + +se+
CP000474_0 235 SQRRLIADTSHQLRNPVGALRLRIDLLQL---------ALRSEPG-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + e+er +++++ +L l+ +e+
CP000474_0 271 ----------KEAAAGVVAELERVEEMLEGVLKLATAEHR 300


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 1 0|=
-14 18 0|==
-13 28 3|*=
-12 165 92|======*====
-11 374 479|========================= *
-10 730 888|================================================= *
-9 850 917|========================================================= *
-8 719 687|=============================================*==
-7 489 433|============================*====
-6 318 249|================*=====
-5 165 136|=========*=
-4 80 73|====*=
-3 42 38|==*
-2 26 20|=*
-1 15 10|*
0 6 5|*
1 1 2|*
2 1 1|*
3 1 0|=
4 1 0|=
5 0 0|
> 6 11 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 151.4626
P(chi-square) = 2.863e-26

Total sequences searched: 4041

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: