Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

3 accessions found for Arthrobacter aurescens TC1  

Data for CP000474  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000474.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000474_2566 CDS_2949761-2948292 88.8 4.5e-25 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000474_2566 1/1 293 354 .. 1 68 [. 88.8 4.5e-25

Alignments of top-scoring domains:
CP000474_2566: domain 1 of 1, from 293 to 354: score 88.8, E = 4.5e-25
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLr+Q+r+ + e+ + L+ + +RV++
CP000474_2 293 EIHHRVKNNLQTVAALLRMQSRRMVSDEA-----KQGLEQAMRRVAT 334

mAliHEeLYksedldtvdfse<-*
+Al+HE L+++ +vdf+e
CP000474_2 335 IALVHETLSQGLT-QSVDFDE 354


Histogram of all scores:
score obs exp (one = represents 18 sequences)
----- --- ---
-15 9 0|=
-14 28 0|==
-13 64 25|=*==
-12 240 265|==============*
-11 1053 739|=========================================*=================
-10 930 956|==================================================== *
-9 681 807|====================================== *
-8 497 541|============================ *
-7 209 321|============ *
-6 183 179|=========*=
-5 65 96|==== *
-4 41 51|==*
-3 22 26|=*
-2 7 14|*
-1 8 7|*
0 2 3|*
> 1 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 275.7478
P(chi-square) = 0

Total sequences searched: 4041

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: