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Classification of phyla is from NCBI page
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106 projects found  

3 accessions found for Arthrobacter aurescens TC1  

Data for CP000474  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000474.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000474_4006 CDS_4552419-4551250 88.4 9.1e-26 1
CP000474_2390 CDS_2743111-2744295 88.2 1e-25 1
CP000474_4018 CDS_4570238-4568958 71.4 9.2e-21 1
CP000474_0442 CDS_477487-476258 59.4 3.2e-17 1
CP000474_0524 CDS_565435-564197 53.0 2.5e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000474_4006 1/1 176 243 .. 1 70 [] 88.4 9.1e-26
CP000474_2390 1/1 190 257 .. 1 70 [] 88.2 1e-25
CP000474_4018 1/1 211 279 .. 1 70 [] 71.4 9.2e-21
CP000474_0442 1/1 201 266 .. 1 70 [] 59.4 3.2e-17
CP000474_0524 1/1 183 248 .. 1 70 [] 53.0 2.5e-15

Alignments of top-scoring domains:
CP000474_4006: domain 1 of 1, from 176 to 243: score 88.4, E = 9.1e-26
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARE+HD+v++sL++++ +++a+ ++ +kdpe+a + l e+
CP000474_4 176 ERNRIAREMHDVVAHSLTVMISLSDGAAVVV--KKDPERAGDVLGEL 220

relarealaevRrllgdLRpaal<-*
+++r ala++Rr+lg+LR++
CP000474_4 221 SRTGRAALADMRRVLGVLRDDSG 243

CP000474_2390: domain 1 of 1, from 190 to 257: score 88.2, E = 1e-25
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER +IARE+HD v++sLs+i+ q+++ar+++ ++ pe a eal++i
CP000474_2 190 ERSHIAREMHDIVAHSLSVIITQADGARYAA--AAKPELATEALATI 234

relarealaevRrllgdLRpaal<-*
++++r++l e+Rrllg+LR +++
CP000474_2 235 AATGRDSLGEMRRLLGVLRSDDD 257

CP000474_4018: domain 1 of 1, from 211 to 279: score 71.4, E = 9.2e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+ARE+HD+++Q++s+i l+ a+++l+ +d e are l+ +
CP000474_4 211 ERERLAREIHDTLAQGFSSIVLMGRSAEKALE-SSDVETARESLKIV 256

relarealaevRrllgdLRpaal<-*
+++a+ lae+R +++LR ++l
CP000474_4 257 QDTASANLAEARSFVRGLRSPDL 279

CP000474_0442: domain 1 of 1, from 201 to 266: score 59.4, E = 3.2e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R +RE+HD+v Q+L++ l le+a+r +++ a + ++ +
CP000474_0 201 ERERVSREIHDTVTQGLASSLLLLEAAQRSW--PAE--TAHDDVRKA 243

relarealaevRrllgdLRpaal<-*
+l+r+ la++R l+++L ++l
CP000474_0 244 TDLLRRNLADTRSLVHELSAPGL 266

CP000474_0524: domain 1 of 1, from 183 to 248: score 53.0, E = 2.5e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+A ELHD v++ + i++q+ +a+ d ++ + l+ i
CP000474_0 183 ERTRLAHELHDIVAHDVTIIAMQARRAEF----VNDQAKTSQILEGI 225

relarealaevRrllgdLRpaal<-*
+a+++l+++R l++ L++ +
CP000474_0 226 GNAAQQTLQDLRSLVTLLKEEER 248


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 5 0|=
-13 47 0|====
-12 86 45|===*===
-11 148 370|============ *
-10 506 859|======================================= *
-9 753 975|==========================================================*
-8 645 752|================================================== *
-7 604 472|====================================*==========
-6 396 267|====================*==========
-5 403 143|==========*====================
-4 172 74|=====*========
-3 114 38|==*======
-2 53 19|=*===
-1 36 10|*==
0 31 5|*==
1 13 2|*
2 10 1|*
3 6 0|=
4 4 0|=
5 2 0|=
6 0 0|
> 7 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1477.8088
P(chi-square) = 0

Total sequences searched: 4041

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: