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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Acidothermus cellulolyticus 11B  

Data for CP000481  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000481.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000481_2096 CDS_2378318-2376405 92.3 4.4e-26 1
CP000481_1444 CDS_1618536-1616962 84.1 9.4e-24 1
CP000481_0089 CDS_93301-92153 73.1 1.2e-20 1
CP000481_1262 CDS_1415313-1414306 69.7 1.1e-19 1
CP000481_1760 CDS_2001756-2000029 67.7 4.1e-19 2
CP000481_1191 CDS_1331877-1333706 63.3 7.2e-18 1
CP000481_1827 CDS_2075837-2074428 61.9 1.8e-17 1
CP000481_1590 CDS_1794880-1793309 48.8 9.4e-14 1
CP000481_1601 CDS_1808180-1806885 35.7 4.7e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000481_2096 1/1 266 331 .. 1 87 [] 92.3 4.4e-26
CP000481_1444 1/1 270 337 .. 1 87 [] 84.1 9.4e-24
CP000481_0089 1/1 129 195 .. 1 87 [] 73.1 1.2e-20
CP000481_1262 1/1 111 179 .. 1 87 [] 69.7 1.1e-19
CP000481_1760 2/2 316 383 .. 1 87 [] 67.7 4.1e-19
CP000481_1191 1/1 383 451 .. 1 87 [] 63.3 7.2e-18
CP000481_1827 1/1 239 306 .. 1 87 [] 61.9 1.8e-17
CP000481_1590 1/1 264 336 .. 1 87 [] 48.8 9.4e-14
CP000481_1601 1/1 228 286 .. 1 87 [] 35.7 4.7e-10

Alignments of top-scoring domains:
CP000481_2096: domain 1 of 1, from 266 to 331: score 92.3, E = 4.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl+ +sHELRTPL++I+g+++lL++ + l++eq
CP000481_2 266 AKSDFLSRMSHELRTPLNVILGFSQLLQM---------ERLTDEQ-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ i +++++ll+Lin++Ld++rie+g
CP000481_2 302 ----------QEWVNQIFKAGRHLLDLINEVLDITRIESG 331

CP000481_1444: domain 1 of 1, from 270 to 337: score 84.1, E = 9.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla++sHELRTPLt+Irgyael ++++ + ++++
CP000481_1 270 RLRRFLADASHELRTPLTSIRGYAELFRRGA-------ARRPDDL-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i++ea r+ L+++lL l+r+++g
CP000481_1 308 ----------EKAMRRIEEEATRMGVLVDELLLLARLDQG 337

CP000481_0089: domain 1 of 1, from 129 to 195: score 73.1, E = 1.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a++++ae++++ + ++ +
CP000481_0 129 VRRDFIANVSHELKTPVGAMLLLAEAIRD---------AQDDPAAL- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++ea+rl+rL+ +l dlsr++ g
CP000481_0 166 ----------THFIDRLIHEANRLSRLVKELIDLSRLQGG 195

CP000481_1262: domain 1 of 1, from 111 to 179: score 69.7, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e++++++HELR PLt+++g++ +Ll +++ ++eqr
CP000481_1 111 DRAELISTVAHELRSPLTSVKGFTATLLH-------KWDRFTDEQR- 149

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +let+ +a+r rLi +lLd sri+a
CP000481_1 150 ----------KLMLETVNADADRVTRLIGELLDVSRIDAD 179

CP000481_1760: domain 2 of 2, from 316 to 383: score 67.7, E = 4.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTP+t+Ir++a++L e ++ ++
CP000481_1 316 VQRRFVSDVSHELRTPVTTIRMAADVLFE-------ARHGFDPAS-- 353

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e ++++++r ++L+ dlL++sr +ag
CP000481_1 354 ----------ARSAELLQNQLDRFESLLADLLEISRHDAG 383

CP000481_1191: domain 1 of 1, from 383 to 451: score 63.3, E = 7.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPL++I++ +++L+ d +s+ ++
CP000481_1 383 MRTALLAAVSHDLRTPLASIKAGVSTLRQ-------TDIQWSPSDV- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++++++++l++Li +lLd+sri +g
CP000481_1 422 ----------AELLSSVDQATDQLDALIANLLDMSRIHTG 451

CP000481_1827: domain 1 of 1, from 239 to 306: score 61.9, E = 1.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTPLt++ + + +L++ + + + + q
CP000481_1 239 RDARFASDVSHELRTPLTTLATSLAVLER-------HTEGWRPAQ-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le +++e+ + +rL++dlL++sr +ag
CP000481_1 277 ----------VQALELVKSETASFQRLVEDLLEISRVDAG 306

CP000481_1590: domain 1 of 1, from 264 to 336: score 48.8, E = 9.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+++++a++ HELRTPLt++r++++lL ++agd ls e+r
CP000481_1 264 LQRQLVADAGHELRTPLTSLRTNLDLLAQ----SeAAGDRGLSREDR 306

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++ ++e l+ L+ dl +l+r + +
CP000481_1 307 -----------LALLADVRAQVEELSGLVADLVELARDDVP 336

CP000481_1601: domain 1 of 1, from 228 to 286: score 35.7, E = 4.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e +a+lsH LRTPL+a+r++ae L + +++
CP000481_1 228 AEREQVADLSHRLRTPLAALRLAAEGLPA-------------SPE-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++++ l+r + d+ +r +
CP000481_1 260 -------------ATRVLEQVDALERAVGDVIREARRGVR 286


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 3 0|=
-13 19 1|*==
-12 78 49|======*===
-11 173 255|====================== *
-10 380 474|================================================ *
-9 415 489|==================================================== *
-8 389 366|=============================================*===
-7 287 231|============================*=======
-6 180 133|================*======
-5 95 72|========*===
-4 56 39|====*==
-3 34 20|==*==
-2 21 10|=*=
-1 5 5|*
0 6 2|*
1 1 1|*
2 2 0|=
3 3 0|=
4 0 0|
> 5 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 137.4257
P(chi-square) = 5.435e-24

Total sequences searched: 2157

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: