Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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3 accessions found for   

Data for CP000483  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000483.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000483_0020 CDS_19091-20209 66.0 1.1e-19 1
CP000483_0063 CDS_70078-68708 42.3 5.8e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000483_0020 1/1 150 216 .. 1 87 [] 66.0 1.1e-19
CP000483_0063 1/1 231 295 .. 1 87 [] 42.3 5.8e-13

Alignments of top-scoring domains:
CP000483_0020: domain 1 of 1, from 150 to 216: score 66.0, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a l+HE+R+PL +Irg+ae+L++++ + ++
CP000483_0 150 TLGEMAAVLAHEIRNPLGSIRGTAEILKDDY--------KPENPK-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e+ +re+erl+r ++d+L ++r +
CP000483_0 187 ----------YEFIEIQIRETERLNRVVEDFLHMARPQPT 216

CP000483_0063: domain 1 of 1, from 231 to 295: score 42.3, E = 5.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + anl+HELRTPLt +rg +e +l+++ +++e r
CP000483_0 231 LRKQICANLAHELRTPLTIMRGQLEGILDGV--------IANDESR- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+e +rl + + + d+ +++a
CP000483_0 269 -------------MKLLLEENHRLTNVVASMEDFFQAQAS 295


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 4 0|====
-12 3 4|===*
-11 22 23|======================*
-10 43 42|=========================================*=
-9 44 44|===========================================*
-8 21 33|===================== *
-7 25 20|===================*=====
-6 13 12|===========*=
-5 4 6|==== *
-4 10 3|==*=======
> -3 6 -|======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 5.3970
P(chi-square) = 0.3694

Total sequences searched: 195

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: