Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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32 projects found  

1 accessions found for Campylobacter fetus subsp. fetus 82-40  

Data for CP000487  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000487.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000487_1214 CDS_1259241-1262291 89.1 2.8e-25 1
CP000487_0517 CDS_544431-543559 45.2 7.4e-13 1
CP000487_1185 CDS_1220368-1221369 40.9 1.3e-11 1
CP000487_0440 CDS_430682-429465 40.7 1.5e-11 1
CP000487_0806 CDS_847248-848372 33.0 2.2e-09 1
CP000487_0727 CDS_775667-774435 31.4 6.2e-09 1
CP000487_0237 CDS_217997-219238 31.2 7.1e-09 1
CP000487_0421 CDS_407016-408665 28.5 4.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000487_1214 1/1 386 451 .. 1 87 [] 89.1 2.8e-25
CP000487_0517 1/1 84 146 .. 1 87 [] 45.2 7.4e-13
CP000487_1185 1/1 128 192 .. 1 87 [] 40.9 1.3e-11
CP000487_0440 1/1 204 262 .. 1 87 [] 40.7 1.5e-11
CP000487_0806 1/1 172 223 .. 1 78 [. 33.0 2.2e-09
CP000487_0727 1/1 209 267 .. 1 87 [] 31.4 6.2e-09
CP000487_0237 1/1 180 246 .. 1 87 [] 31.2 7.1e-09
CP000487_0421 1/1 327 397 .. 1 87 [] 28.5 4.2e-08

Alignments of top-scoring domains:
CP000487_1214: domain 1 of 1, from 386 to 451: score 89.1, E = 2.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sHE+RTPL++I+g+++lL++ ++l ++
CP000487_1 386 SKSAFLANISHEIRTPLNGIIGFTDLLKN---------SNLKKQE-- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ +i++++e llr+in++Ld+s+ie+
CP000487_1 422 ----------KELVGVIEQSSENLLRIINNILDISKIESR 451

CP000487_0517: domain 1 of 1, from 84 to 146: score 45.2, E = 7.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sHE+++P+++I++ a+++l+ +++s e r
CP000487_0 84 QLENLLSGISHEFKNPISVIKMSAQTILD---------DDASKEIR- 120

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++i++ ++rl++++n l ri g
CP000487_0 121 ----------IKFINKIISNSDRLNNILNKL----RIVFG 146

CP000487_1185: domain 1 of 1, from 128 to 192: score 40.9, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+lsHE+R+P+ +I++++++Ll+ ++++
CP000487_1 128 SMGAVAAHLSHEIRNPIGSISLLTSTLLK----------RADDKN-- 162

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e i++++ r +r+i L +++
CP000487_1 163 ----------RPLIEEIQKAIFRVERIIKATLLFTKGVCI 192

CP000487_0440: domain 1 of 1, from 204 to 262: score 40.7, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +fl ++sHELRTP++ + +++ L++
CP000487_0 204 ARMQFLTDISHELRTPISKSKIALSFLED------------------ 232

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y +++++++ +++L ++lL ++r+ ++
CP000487_0 233 ----------GKYKNILKNSVTAMDKLTDELLHIERLNSN 262

CP000487_0806: domain 1 of 1, from 172 to 223: score 33.0, E = 2.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ + HE++TPL++I++ +e+ + +
CP000487_0 172 TLNNFITDTTHEINTPLSVILMSVEMFDK---------NP------- 202

peLRledpeyreyletilreaerllrLindl<-*
+yle i+ +++ l++L ndl
CP000487_0 203 ----------SKYLENIKIASKTLSNLYNDL 223

CP000487_0727: domain 1 of 1, from 209 to 267: score 31.4, E = 6.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl+n+ HEL+TP+t r +ae++++
CP000487_0 209 SRQLFLRNIMHELKTPITKGRITAEMIEK------------------ 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e++++ erl++Lin++ l+r +g
CP000487_0 238 ----------TKNQERLINVFERLESLINEFAALERVTSG 267

CP000487_0237: domain 1 of 1, from 180 to 246: score 31.2, E = 7.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e++ +++HEL+TPL+++++ e+ l + +e+
CP000487_0 180 YQKELFVGAAHELKTPLAVMKTKNEVTLI---------KQREPEK-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e+l+ +++++++++i +L++ r e
CP000487_0 216 ---------YIEALKNNNESINQMNKMIGSILEIGRQEGA 246

CP000487_0421: domain 1 of 1, from 327 to 397: score 28.5, E = 4.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++ +sH+L++PL++ +++++ l l +d + see+
CP000487_0 327 ETGELIGVISHQLKQPLNSTKLMISSVLQ-----LKEDKNISEEDE- 367

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ l++ e+l++ i+++ + + +
CP000487_0 368 ----------KNSLKLCLDSMEHLNKTIENFKNFYKFDPS 397


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 12 0|==
-13 31 1|*=====
-12 77 39|======*======
-11 201 203|=================================*
-10 312 378|==================================================== *
-9 332 390|======================================================== *
-8 258 292|=========================================== *
-7 187 184|==============================*=
-6 114 106|=================*=
-5 87 58|=========*=====
-4 39 31|=====*=
-3 21 16|==*=
-2 18 8|=*=
-1 8 4|*=
0 4 2|*
1 2 1|*
2 4 0|=
3 1 0|=
4 0 0|
5 1 0|=
6 0 0|
> 7 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 88.9187
P(chi-square) = 8.773e-15

Total sequences searched: 1719

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: