Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
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3 accessions found for   

Data for CP000489  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000489.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000489_1763 CDS_1776681-1778087 37.2 7.7e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000489_1763 1/1 263 332 .. 1 70 [] 37.2 7.7e-11

Alignments of top-scoring domains:
CP000489_1763: domain 1 of 1, from 263 to 332: score 37.2, E = 7.7e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ERaRIA +LHD++g +L+a+ ++ a r++ + +++++eal +
CP000489_1 263 ERARIASDLHDGIGPQLFALQAAVGQAGRAA--GTGRDpALAEALSA 307

irelarealaevRrllgdLR.paal<-*
+ ++a+ + +R+++ dLR +a+
CP000489_1 308 VSRHAQAIRQSARAAIDDLRlAPAE 332


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 4 0|=
-13 15 0|==
-12 52 31|===*==
-11 88 256|========== *
-10 304 595|================================== *
-9 497 675|======================================================== *
-8 420 520|=============================================== *
-7 421 327|====================================*==========
-6 319 185|====================*===============
-5 293 99|==========*======================
-4 149 51|=====*===========
-3 85 26|==*=======
-2 54 13|=*====
-1 39 6|*====
0 18 3|*=
1 10 1|*=
2 13 0|==
3 5 0|=
4 4 0|=
5 3 0|=
6 1 0|=
7 0 0|
8 1 0|=
9 0 0|
10 1 0|=
11 1 0|=
12 0 0|
> 13 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1410.3099
P(chi-square) = 0

Total sequences searched: 2799

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: