Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

3 accessions found for Paracoccus denitrificans PD1222  

Data for CP000489  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP000489.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000489_1616 CDS_1617704-1616616 100.8 2.4e-34 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000489_1616 1/1 167 247 .. 1 85 [] 100.8 2.4e-34

Alignments of top-scoring domains:
CP000489_1616: domain 1 of 1, from 167 to 247: score 100.8, E = 2.4e-34
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
EL HR+KNtL+vV++i++QTl+++ +d+ +e +++R+ AL++a++L
CP000489_1 167 ELGHRIKNTLTVVSAIVNQTLHSHSGKDA-REVLRQRIGALAQAQSL 212

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
Lt+s + A+ r++++++LaP+++ +++R+++ GP+
CP000489_1 213 --LTDSGALDAETRQVVAQALAPFRT-GQRRFRIAGPP 247


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 5 0|=
-13 26 0|===
-12 188 0|=====================
-11 237 22|==*========================
-10 385 289|================================*==========
-9 514 716|==========================================================*
-8 526 743|==========================================================*
-7 357 499|======================================== *
-6 239 272|=========================== *
-5 148 135|==============*==
-4 80 64|=======*=
-3 36 29|===*
-2 16 13|=*
-1 13 6|*=
0 14 2|*=
1 6 1|*
2 4 0|=
> 3 5 -|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 2215.9355
P(chi-square) = 0

Total sequences searched: 2799

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: