Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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3 accessions found for   

Data for CP000490  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000490.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000490_0158 CDS_166023-164596 57.8 4e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000490_0158 1/1 264 334 .. 1 70 [] 57.8 4e-17

Alignments of top-scoring domains:
CP000490_0158: domain 1 of 1, from 264 to 334: score 57.8, E = 4e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe...eareal
ER RIA +LHD+ g +L+a++ ++ a++++ ++ pe++ +++e+l
CP000490_0 264 ERSRIALDLHDEMGPQLFALRAAVSHAQAMT--ADLPErpaALDETL 308

deirelarealaevRrllgdLRpaal<-*
d+i+++a e ++ +R ++ dLRp+ l
CP000490_0 309 DAIAGHALEVQRSARTAINDLRPMLL 334


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-13 11 0|===
-12 23 18|===*=
-11 67 152|============== *
-10 163 353|================================= *
-9 281 401|========================================================= *
-8 227 309|============================================== *
-7 265 194|======================================*==============
-6 194 110|=====================*=================
-5 195 59|===========*===========================
-4 87 30|=====*============
-3 54 15|==*========
-2 41 8|=*=======
-1 27 4|*=====
0 9 2|*=
1 4 1|*
2 6 0|==
3 1 0|=
4 0 0|
5 2 0|=
6 1 0|=
7 0 0|
8 0 0|
9 2 0|=
> 10 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 940.1440
P(chi-square) = 0

Total sequences searched: 1662

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: