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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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3 accessions found for Paracoccus denitrificans PD1222  

Data for CP000491  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000491.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000491_0594 CDS_626607-629312 91.4 2.2e-26 1
CP000491_0247 CDS_262152-260470 40.4 6.4e-12 1
CP000491_0139 CDS_145872-147824 33.6 5.3e-10 2
CP000491_0224 CDS_227240-225816 31.1 2.7e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000491_0594 1/1 669 736 .. 1 87 [] 91.4 2.2e-26
CP000491_0247 1/1 343 410 .. 1 87 [] 40.4 6.4e-12
CP000491_0224 1/1 234 302 .. 1 87 [] 31.1 2.7e-09
CP000491_0139 2/2 430 493 .. 1 87 [] 30.6 3.7e-09

Alignments of top-scoring domains:
CP000491_0594: domain 1 of 1, from 669 to 736: score 91.4, E = 2.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++++ HELRTPLt+Ir+++el+l+ ++ +++r
CP000491_0 669 LKDDFMSSVTHELRTPLTSIRALTELMLD--------TPDIQPQER- 706

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l++il+e+erl+rL+n++Ldl++ie+g
CP000491_0 707 ----------EEFLNIILSESERLSRLVNQVLDLAKIESG 736

CP000491_0247: domain 1 of 1, from 343 to 410: score 40.4, E = 6.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE +TPL++Ir++ae + + l+e+
CP000491_0 343 TLGQITAGVAHEVNTPLATIRLLAEN-SR---------HMLPEDA-- 377

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p + l ilr ++r+ ++ +l+ ++r +g
CP000491_0 378 -------PDLDRNLAQILRMTDRIAQITTELRGFARKATG 410

CP000491_0224: domain 1 of 1, from 234 to 302: score 31.1, E = 2.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ ++sH++RTP++ I + a+ l+ gd+++ +e++
CP000491_0 234 VYRSFIVTVSHQFRTPVSIIHMIAQRQLR-------GDEAALSETL- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++il++aerl+rL++ +L + e
CP000491_0 273 ----------RRKFSRILDAAERLERLLSSFLASASVEGK 302

CP000491_0139: domain 2 of 2, from 430 to 493: score 30.6, E = 3.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a++sHE+++PL+aI ++ L + + ++
CP000491_0 430 ALGQMSAAISHEINQPLAAIGHRLHNLGA-----------AHPDA-- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ +i+ +er+ r i l+ ++r a
CP000491_0 464 ----------RPAIARIEALLERITRTIGHLRRIARRSAH 493


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 3 0|==
-12 18 14|======*==
-11 46 73|======================= *
-10 107 135|====================================================== *
-9 113 139|========================================================= *
-8 113 104|===================================================*=====
-7 95 66|================================*===============
-6 58 37|==================*==========
-5 28 20|=========*====
-4 13 11|=====*=
-3 10 5|==*==
-2 4 3|=*
-1 0 1|*
0 2 0|=
> 1 6 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 51.8024
P(chi-square) = 4.926e-08

Total sequences searched: 616

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: