Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

1 accessions found for Chlorobium phaeobacteroides DSM 266  

Data for CP000492  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000492.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000492_2080 CDS_2493787-2490830 104.3 2.1e-29 1
CP000492_0596 CDS_688486-692682 101.2 1.6e-28 1
CP000492_2261 CDS_2736036-2732875 97.6 1.6e-27 1
CP000492_0852 CDS_1005105-1006877 95.0 9.2e-27 1
CP000492_1727 CDS_2036521-2033726 45.3 1.1e-12 1
CP000492_1494 CDS_1761396-1758925 35.8 5.4e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000492_2080 1/1 327 392 .. 1 87 [] 104.3 2.1e-29
CP000492_0596 1/1 867 932 .. 1 87 [] 101.2 1.6e-28
CP000492_2261 1/1 683 749 .. 1 87 [] 97.6 1.6e-27
CP000492_0852 1/1 363 430 .. 1 87 [] 95.0 9.2e-27
CP000492_1727 1/1 559 625 .. 1 87 [] 45.3 1.1e-12
CP000492_1494 1/1 450 516 .. 1 87 [] 35.8 5.4e-10

Alignments of top-scoring domains:
CP000492_2080: domain 1 of 1, from 327 to 392: score 104.3, E = 2.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE RTP+++++g+++lLl+ t l++eq
CP000492_2 327 AKSQFLANMSHEVRTPMNGVIGMSDLLLD---------TSLDPEQ-- 362

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+eti+++++ ll++ind+Ld+s+iea+
CP000492_2 363 ----------RKYVETIISSGKNLLSIINDILDFSKIEAN 392

CP000492_0596: domain 1 of 1, from 867 to 932: score 101.2, E = 1.6e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g+a lLl+ t+ls+eq
CP000492_0 867 AKSEFLANMSHEIRTPMNGVIGMANLLLD---------TDLSDEQ-- 902

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + +l ++e+ll ind+Ld+s+ieag
CP000492_0 903 ----------RDFADMLLASGESLLTVINDILDFSKIEAG 932

CP000492_2261: domain 1 of 1, from 683 to 749: score 97.6, E = 1.6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ flan+sHE+RTP+++I+g++elL+e ++ls e++
CP000492_2 683 LKTAFLANISHEIRTPMNGILGFSELLKE---------PHLSGEEQ- 719

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey++ i ++++r+l+Lin+l d+srie+g
CP000492_2 720 ----------TEYINLINQSGQRMLHLINELVDISRIESG 749

CP000492_0852: domain 1 of 1, from 363 to 430: score 95.0, E = 9.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+I+gy+e+Ll+ +++ +++++
CP000492_0 363 IRRDFVSSVSHELRTPLTSIKGYTETLLD---------GAMHDPEHA 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++il+e+e+l +L+nd+Ldlsrie+g
CP000492_0 401 ----------AAFLRIILQESEQLTALVNDVLDLSRIESG 430

CP000492_1727: domain 1 of 1, from 559 to 625: score 45.3, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ Lt ++gyae+ l ls+e l
CP000492_1 559 TIGTLAGGIAHDFNNILTPLLGYAEMGLS----------SLSSESPL 595

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ i++++er +Li ++L++sr ++
CP000492_1 596 ----------YDYFSEIIQASERAKNLIAQILTFSRPGES 625

CP000492_1494: domain 1 of 1, from 450 to 516: score 35.8, E = 5.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L +I+g++e++le + ++e +
CP000492_1 450 MVGRLAGGIAHDFNNMLGVILGHTEIALE---------QLDPSESA- 486

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le i+++a r Li++lL ++r ++
CP000492_1 487 ----------YADLEAIRKAAARSAGLIRQLLAFARKQTV 516


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 6 0|=
-13 31 1|*===
-12 126 60|======*=======
-11 286 314|================================ *
-10 464 582|==================================================== *
-9 479 601|====================================================== *
-8 416 450|=============================================== *
-7 337 283|===============================*======
-6 211 163|==================*=====
-5 97 89|=========*=
-4 62 47|=====*=
-3 45 25|==*==
-2 54 13|=*====
-1 14 6|*=
0 7 3|*
1 0 1|*
2 2 0|=
3 1 0|=
> 4 12 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 300.6206
P(chi-square) = 0

Total sequences searched: 2650

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: