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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

2 accessions found for Bradyrhizobium sp. BTAi1  

Data for CP000494  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000494.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000494_5448 CDS_6055383-6051484 124.5 1.1e-34 2
CP000494_4159 CDS_4640127-4637809 97.6 4.8e-27 1
CP000494_2035 CDS_2231651-2234011 94.0 5e-26 1
CP000494_0131 CDS_145763-148000 93.0 9.2e-26 1
CP000494_3296 CDS_3659372-3661561 92.3 1.5e-25 1
CP000494_0493 CDS_508974-506422 91.7 2.2e-25 1
CP000494_2907 CDS_3242570-3240246 89.5 9.5e-25 1
CP000494_2860 CDS_3181077-3182840 87.1 4.4e-24 1
CP000494_3248 CDS_3609403-3607805 83.7 4e-23 1
CP000494_0716 CDS_777905-779212 78.1 1.6e-21 1
CP000494_5877 CDS_6505946-6502338 78.0 1.7e-21 1
CP000494_0616 CDS_662678-659304 76.7 4e-21 1
CP000494_4058 CDS_4518985-4524072 76.3 5.2e-21 1
CP000494_6402 CDS_7141607-7144552 70.1 2.9e-19 1
CP000494_0081 CDS_86159-88666 68.9 6.2e-19 1
CP000494_6927 CDS_7740603-7742420 68.3 9.3e-19 2
CP000494_5948 CDS_6600349-6597632 64.9 8.6e-18 1
CP000494_4622 CDS_5143653-5146121 59.2 3.6e-16 1
CP000494_0223 CDS_237677-239827 58.9 4.4e-16 2
CP000494_0816 CDS_888339-884830 57.1 1.4e-15 1
CP000494_0836 CDS_913940-915544 52.7 2.4e-14 1
CP000494_3830 CDS_4263724-4264911 51.0 7.3e-14 1
CP000494_3467 CDS_3857955-3855100 50.8 8.5e-14 1
CP000494_4623 CDS_5146216-5147703 48.7 3.4e-13 1
CP000494_6801 CDS_7591045-7589591 48.2 4.7e-13 1
CP000494_4067 CDS_4531412-4533037 48.1 5e-13 1
CP000494_1640 CDS_1809694-1808306 47.8 6.2e-13 1
CP000494_1461 CDS_1631993-1633588 47.7 6.5e-13 1
CP000494_5987 CDS_6642317-6640527 47.4 7.9e-13 1
CP000494_2898 CDS_3227888-3229348 46.6 1.3e-12 1
CP000494_3832 CDS_4266534-4268888 46.2 1.7e-12 1
CP000494_5004 CDS_5556736-5559546 43.7 8.6e-12 1
CP000494_5652 CDS_6244088-6242298 42.9 1.5e-11 1
CP000494_2263 CDS_2487464-2489158 42.3 2.2e-11 1
CP000494_5880 CDS_6510347-6511819 41.3 4.1e-11 1
CP000494_5835 CDS_6464494-6465897 41.0 5.3e-11 1
CP000494_0673 CDS_731159-729414 40.6 6.6e-11 1
CP000494_2617 CDS_2884974-2883463 40.2 8.4e-11 1
CP000494_3260 CDS_3626148-3627485 39.5 1.3e-10 1
CP000494_7364 CDS_8231037-8232626 39.5 1.3e-10 1
CP000494_6286 CDS_6969142-6970530 39.3 1.6e-10 1
CP000494_7010 CDS_7833542-7834762 38.2 3.2e-10 1
CP000494_4093 CDS_4574043-4572241 38.1 3.5e-10 1
CP000494_5816 CDS_6441294-6439918 37.9 3.8e-10 1
CP000494_0507 CDS_525605-522024 37.7 4.5e-10 1
CP000494_3985 CDS_4448224-4450488 37.6 4.7e-10 1
CP000494_1080 CDS_1211535-1212674 37.3 5.8e-10 1
CP000494_5148 CDS_5709993-5707315 34.1 4.5e-09 1
CP000494_7199 CDS_8060392-8061741 34.1 4.7e-09 1
CP000494_3984 CDS_4445725-4448010 30.9 3.7e-08 1
CP000494_1899 CDS_2078603-2079970 28.8 1.4e-07 1
CP000494_0497 CDS_511651-512391 28.2 2.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000494_4159 1/1 372 437 .. 1 87 [] 97.6 4.8e-27
CP000494_2035 1/1 398 463 .. 1 87 [] 94.0 5e-26
CP000494_0131 1/1 233 298 .. 1 87 [] 93.0 9.2e-26
CP000494_3296 1/1 339 404 .. 1 87 [] 92.3 1.5e-25
CP000494_0493 1/1 328 393 .. 1 87 [] 91.7 2.2e-25
CP000494_2907 1/1 537 606 .. 1 87 [] 89.5 9.5e-25
CP000494_2860 1/1 329 398 .. 1 87 [] 87.1 4.4e-24
CP000494_3248 1/1 262 331 .. 1 87 [] 83.7 4e-23
CP000494_0716 1/1 200 267 .. 1 87 [] 78.1 1.6e-21
CP000494_5877 1/1 330 397 .. 1 87 [] 78.0 1.7e-21
CP000494_0616 1/1 672 738 .. 1 87 [] 76.7 4e-21
CP000494_4058 1/1 1018 1086 .. 1 87 [] 76.3 5.2e-21
CP000494_5448 1/2 358 426 .. 1 87 [] 71.2 1.4e-19
CP000494_6402 1/1 747 816 .. 1 87 [] 70.1 2.9e-19
CP000494_0081 1/1 603 671 .. 1 87 [] 68.9 6.2e-19
CP000494_6927 2/2 370 435 .. 1 87 [] 66.7 2.7e-18
CP000494_5948 1/1 672 740 .. 1 87 [] 64.9 8.6e-18
CP000494_4622 1/1 450 516 .. 1 87 [] 59.2 3.6e-16
CP000494_0816 1/1 803 868 .. 1 87 [] 57.1 1.4e-15
CP000494_0223 2/2 335 401 .. 1 87 [] 57.0 1.5e-15
CP000494_5448 2/2 929 991 .. 1 83 [. 53.2 1.8e-14
CP000494_0836 1/1 159 226 .. 1 87 [] 52.7 2.4e-14
CP000494_3830 1/1 139 194 .. 1 78 [. 51.0 7.3e-14
CP000494_3467 1/1 592 658 .. 1 87 [] 50.8 8.5e-14
CP000494_4623 1/1 283 348 .. 1 87 [] 48.7 3.4e-13
CP000494_6801 1/1 247 305 .. 1 87 [] 48.2 4.7e-13
CP000494_4067 1/1 318 390 .. 1 87 [] 48.1 5e-13
CP000494_1640 1/1 259 317 .. 1 87 [] 47.8 6.2e-13
CP000494_1461 1/1 287 355 .. 1 87 [] 47.7 6.5e-13
CP000494_5987 1/1 230 295 .. 1 87 [] 47.4 7.9e-13
CP000494_2898 1/1 237 303 .. 1 87 [] 46.6 1.3e-12
CP000494_3832 1/1 507 578 .. 1 87 [] 46.2 1.7e-12
CP000494_5004 1/1 567 633 .. 1 87 [] 43.7 8.6e-12
CP000494_5652 1/1 165 230 .. 1 87 [] 42.9 1.5e-11
CP000494_2263 1/1 192 257 .. 1 87 [] 42.3 2.2e-11
CP000494_5880 1/1 121 187 .. 1 87 [] 41.3 4.1e-11
CP000494_5835 1/1 253 311 .. 1 87 [] 41.0 5.3e-11
CP000494_0673 1/1 352 421 .. 1 87 [] 40.6 6.6e-11
CP000494_2617 1/1 274 345 .. 1 87 [] 40.2 8.4e-11
CP000494_3260 1/1 230 288 .. 1 87 [] 39.5 1.3e-10
CP000494_7364 1/1 160 226 .. 1 87 [] 39.5 1.3e-10
CP000494_6286 1/1 244 306 .. 1 87 [] 39.3 1.6e-10
CP000494_7010 1/1 179 249 .. 1 87 [] 38.2 3.2e-10
CP000494_4093 1/1 226 292 .. 1 87 [] 38.1 3.5e-10
CP000494_5816 1/1 240 298 .. 1 87 [] 37.9 3.8e-10
CP000494_0507 1/1 824 890 .. 1 87 [] 37.7 4.5e-10
CP000494_3985 1/1 378 444 .. 1 87 [] 37.6 4.7e-10
CP000494_1080 1/1 1 61 [. 6 87 .] 37.3 5.8e-10
CP000494_5148 1/1 507 573 .. 1 87 [] 34.1 4.5e-09
CP000494_7199 1/1 214 280 .. 1 87 [] 34.1 4.7e-09
CP000494_3984 1/1 378 444 .. 1 87 [] 30.9 3.7e-08
CP000494_1899 1/1 211 306 .. 1 87 [] 28.8 1.4e-07
CP000494_0497 1/1 32 98 .. 1 87 [] 28.2 2.1e-07

Alignments of top-scoring domains:
CP000494_4159: domain 1 of 1, from 372 to 437: score 97.6, E = 4.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP+++++g+a++Lle t+l++eq
CP000494_4 372 AKSEFLAMMSHEIRTPMNGVLGLASTLLE---------TKLDPEQ-- 407

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ ti+++++ l+r++nd+Ldls++ ag
CP000494_4 408 ----------RHAVMTIRESGDNLQRILNDILDLSKLNAG 437

CP000494_2035: domain 1 of 1, from 398 to 463: score 94.0, E = 5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTPL+++ g+++lL+ t lseeq
CP000494_2 398 AKSDFLAIMSHEIRTPLSGMVGMVDLLRG---------TSLSEEQ-- 433

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ ++++a+ ll+ ind+Ld+s++eag
CP000494_2 434 ----------KRYTALAKESADLLLEVINDILDFSKLEAG 463

CP000494_0131: domain 1 of 1, from 233 to 298: score 93.0, E = 9.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++I+g++ lLle t l++eq
CP000494_0 233 AKSRFLAMASHEIRTPLNGILGMSGLLLE---------TQLTPEQ-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y + +++++e l +Lin+lLd+s+ieag
CP000494_0 269 ----------TTYAKAVRSSGEALMSLINELLDYSKIEAG 298

CP000494_3296: domain 1 of 1, from 339 to 404: score 92.3, E = 1.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+sefla++sHE+RTP+++++g+a+lLl ++l +eq
CP000494_3 339 ARSEFLAMMSHEIRTPMNGVIGLADLLLS---------ADLAPEQ-- 374

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ t++++a++ll+L+nd+Ld+s+++a
CP000494_3 375 ----------RKIATTLRESADYLLQLLNDVLDFSKLDAD 404

CP000494_0493: domain 1 of 1, from 328 to 393: score 91.7, E = 2.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+a++sHE+RTP++a++g+a +Lle t+l++eq
CP000494_0 328 AKSTFVAMMSHEIRTPMNAVLGLATTLLE---------TNLDPEQ-- 363

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + i+++++ ll+++nd+Ld+s++e+g
CP000494_0 364 ----------RRSVVAIHNAGDNLLEILNDILDFSKLESG 393

CP000494_2907: domain 1 of 1, from 537 to 606: score 89.5, E = 9.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL+aI+g++e++ +++ + l++e+
CP000494_2 537 TKSKFLANMSHELRTPLNAIIGFSEIMGSGMF------GSLGSEK-- 575

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + il ++++ll+ ind+Ld+s+ieag
CP000494_2 576 ---------YQEYCHDILTSGQYLLEVINDILDMSKIEAG 606

CP000494_2860: domain 1 of 1, from 329 to 398: score 87.1, E = 4.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHELRTPL+aI+g++e+L e+ l++ r
CP000494_2 329 AKTRFLATMSHELRTPLNAIIGFSEMLMQEQA------LVLNAARR- 368

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey + i +++++ll+ +n +Ld+s++e+g
CP000494_2 369 ----------REYAQLINDSGQHLLSVVNGILDMSKMESG 398

CP000494_3248: domain 1 of 1, from 262 to 331: score 83.7, E = 4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHELRTPL+aI+g++e+++ + ++
CP000494_3 262 AKSRFLAQMSHELRTPLNAILGFSEVMKS---------EIFGAHA-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+p y+ey i++++ +ll+Lin++Ldlsrieag
CP000494_3 298 ------VPVYKEYSADIHNSGVHLLNLINEILDLSRIEAG 331

CP000494_0716: domain 1 of 1, from 200 to 267: score 78.1, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL+a++g++++L+ ++ +++ r
CP000494_0 200 MRADFVANASHELRTPLAALSGFIDTLQG--------PAKDDAKAR- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ +a r+ rLi+dlL lsr e
CP000494_0 238 ----------ERFLGIMHTQATRMARLIDDLLSLSRVELS 267

CP000494_5877: domain 1 of 1, from 330 to 397: score 78.0, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ef+an+sHE+RTPLt ++g +e l+++ ++ls e+
CP000494_5 330 AKTEFFANVSHEFRTPLTLMLGPLEDVLTRS-------PALSLED-- 367

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le+++r a rll+L+n lLd+srieag
CP000494_5 368 ----------RERLEVAQRNALRLLKLVNTLLDFSRIEAG 397

CP000494_0616: domain 1 of 1, from 672 to 738: score 76.7, E = 4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELR PL+aI+gya+lL+ dt l ++
CP000494_0 672 AKSRYVVGLSHELRSPLNAISGYAQLLEQ--------DTSLAPKP-- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++++r+a++l+ Li+ +Ld+s+ieag
CP000494_0 709 ----------RDQVRVVRRSADHLSGLIDGILDISKIEAG 738

CP000494_4058: domain 1 of 1, from 1018 to 1086: score 76.3, E = 5.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ + + L e d++l+ +q
CP000494_4 1018 YKSEFLANMSHELRTPLNSILILGQQLTE------NPDGNLTMKQ-- 1056

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti+ ++ ll+Li+d+Ldls+ie+g
CP000494_4 1057 ----------VEFARTIHGAGTDLLNLISDILDLSKIESG 1086

CP000494_5448: domain 1 of 2, from 358 to 426: score 71.2, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt ++ +e +l+++d + l++eq
CP000494_5 358 AKTTFFSNISHEFRTPLTLMLSPLEDMLARAD------AGLGAEQ-- 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ i+r + rll+L+n lLd+srieag
CP000494_5 397 ----------LAMLNLIHRNGIRLLKLVNTLLDFSRIEAG 426

CP000494_6402: domain 1 of 1, from 747 to 816: score 70.1, E = 2.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak ++la +sHE R PL+aI+g+ae++ + ++l+
CP000494_6 747 AKADMLARISHEVRAPLNAIIGFAEVMIG------ERFGTLGNTR-- 785

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i+ ++er +Li+dlL+lsrie+g
CP000494_6 786 ---------YAEYMKDIRASGERVVSLIDDLLELSRIETG 816

CP000494_0081: domain 1 of 1, from 603 to 671: score 68.9, E = 6.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f+ ++s ELR PLt+I+g+a+ L + ++ ++l+++q
CP000494_0 603 MKIDFVHHVSYELRAPLTTIIGFAHFLSD------PSTGPLTPKQ-- 641

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+ + ++++ ll+L n++Ldl+ i+ag
CP000494_0 642 ----------AEYLDYVTKSTNALLALTNNILDLATIDAG 671

CP000494_6927: domain 2 of 2, from 370 to 435: score 66.7, E = 2.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a+++HEL++PLt++r ++e+L ++++ r
CP000494_6 370 AIEMFAADVAHELKNPLTSLRSAVETLPL----------ARNDNSR- 405

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +i+++++rl+rLi+d+ d sr++a+
CP000494_6 406 ----------GRLLAVIEHDVKRLDRLISDISDASRLDAE 435

CP000494_5948: domain 1 of 1, from 672 to 740: score 64.9, E = 8.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l ++sH+L+TPL++++g+a+++++ + t ls+ ++
CP000494_5 672 LRSALLTSISHDLKTPLASVLGAASTMRDLA-------TRLSDREK- 710

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l t+++e+erl+r i +lLd++++e+g
CP000494_5 711 ----------LDLLATVIDESERLNRFIANLLDMTKLESG 740

CP000494_4622: domain 1 of 1, from 450 to 516: score 59.2, E = 3.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir +++ L++ +l+ee r
CP000494_4 450 AVGQLTGGVAHDFNNLLTIIRSATDFLRR---------RDLPEERR- 486

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i + +er ++L +lL ++r +
CP000494_4 487 ----------RRYVDAISETVERASKLTGQLLAFARRQPL 516

CP000494_0816: domain 1 of 1, from 803 to 868: score 57.1, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH++ +PL+a r+y+ L e +++++ee
CP000494_0 803 SKTRFLAAASHDILQPLNAARLYITSLVE--------RQTAGEES-- 839

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e i++++e +++++ lLd+sr++ag
CP000494_0 840 -----------RLVENIDDSLEAIEEILGALLDISRLDAG 868

CP000494_0223: domain 2 of 2, from 335 to 401: score 57.0, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lt+Ir+ a+lL++ ++l+ee r
CP000494_0 335 ALGQLTGGVAHDFNNLLTVIRASADLLRR---------ANLPEERR- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ i + + r ++L ++lL ++r ++
CP000494_0 372 ----------LRYIDAISDTVARASKLTSQLLAFARRQTL 401

CP000494_5448: domain 2 of 2, from 929 to 991: score 53.2, E = 1.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+Ir a+lL++ l++e +
CP000494_5 929 AIGQLTGGVAHDFNNLLTVIRSSADLLRR---------RQLPPERM- 965

peLRledpeyreyletilreaerllrLindlLdlsr<-*
r+y++ i + a+r +L +lL ++r
CP000494_5 966 ----------RRYVDAISDTADRAAKLTGQLLAFAR 991

CP000494_0836: domain 1 of 1, from 159 to 226: score 52.7, E = 2.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +I+gy+e+L+ + +el + +
CP000494_0 159 AIGQLTGGIAHDFNNILQVIIGYTETLQGAV-------SELAPRH-- 196

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e i+++a+r L ++lL ++r +
CP000494_0 197 ----------RRAVENIRSAANRAATLTQQLLSFARKQRL 226

CP000494_3830: domain 1 of 1, from 139 to 194: score 51.0, E = 7.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+l+HE+++PL++Irg+a+lL+ +s+e+
CP000494_3 139 SVIALAAMLAHEIKNPLSGIRGAAQLLEQ----------QASSED-- 173

peLRledpeyreyletilreaerllrLindl<-*
r +++ i +ea+r+ L++++
CP000494_3 174 ----------RMLTRLICDEADRIVTLVDRM 194

CP000494_3467: domain 1 of 1, from 592 to 658: score 50.8, E = 8.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lt I g++++L++ ++ +e +
CP000494_3 592 AMGQLTGGVAHDFNNLLTPIVGALDMLQR--------RGVGGERE-- 628

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + ++a+r L+++lL ++r +
CP000494_3 629 ----------QRLIAGAVQSADRAKTLVQRLLAFARRQPL 658

CP000494_4623: domain 1 of 1, from 283 to 348: score 48.7, E = 3.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ anl+HE+R+P++a+r+ ae +l+ + ++ +
CP000494_4 283 AVGRLSANLAHEIRNPIAAMRLKAENALA---------SSDPARK-- 318

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le il+++ rl++L++dlL +++ ++
CP000494_4 319 ----------SSALEAILQQVARLDALLRDLLATTQAVQP 348

CP000494_6801: domain 1 of 1, from 247 to 305: score 48.2, E = 4.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ fl+n++HELRTPLt r+++e++ +
CP000494_6 247 AQRHFLSNAAHELRTPLTNARTMLEVIPD------------------ 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e + l+ ++ lL+l+ri +
CP000494_6 276 ----------GALRARLIAENQKLSTIVTMLLQLARISME 305

CP000494_4067: domain 1 of 1, from 318 to 390: score 48.1, E = 5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f a+l HEL+ PLt+I+g+aelLl+ l a++++l+ ++
CP000494_4 318 YLKNFSAHLTHELKSPLTSIKGAAELLLDSLR---ASSDHLTRTEQ- 360

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l il ++erl+++ ++l++l+r+e
CP000494_4 361 ----------ERFLLNILGDTERLEQMAQRLRELARAEVL 390

CP000494_1640: domain 1 of 1, from 259 to 317: score 47.8, E = 6.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRT Lt ++ + lL + +++
CP000494_1 259 QRTAMLAGVSHDLRTILTRFKLELALLGD-------------SPE-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++++ ++++++d L ++r ++g
CP000494_1 291 -------------IDAMRKDVDEMSHMLEDYLAFARGDNG 317

CP000494_1461: domain 1 of 1, from 287 to 355: score 47.7, E = 6.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHE+RTPLt+I g a+ L + + ++++ ++
CP000494_1 287 LRQDFVSMASHEFRTPLTVIDGQAQRLAK-------TSKDATSADI- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +i++++ r+ i+ lL +s + +g
CP000494_1 326 ----------VERAGKIRKAVFRMTTVIDKLLNFSSLVEG 355

CP000494_5987: domain 1 of 1, from 230 to 295: score 47.4, E = 7.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sH+LR+PL+a+ +y elL + ++ e+
CP000494_5 230 ERTRFFSAASHDLRQPLNAMGLYFELLAR---------SPDQEDR-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ +++++a +llr+ + ++ s +a
CP000494_5 266 ----------NEIIARLQDCATSLLRQFDAIMGVSATDAD 295

CP000494_2898: domain 1 of 1, from 237 to 303: score 46.6, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e n++H+L+TPLt +r ae +l+ +se++
CP000494_2 237 GLKEVSDNIAHDLKTPLTRLRNRAEEALA---------KSRSEDE-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le+ ++e++ l r n lL ++r+e+g
CP000494_2 273 ---------YRAALERTIEESDGLIRTFNALLMIARAESG 303

CP000494_3832: domain 1 of 1, from 507 to 578: score 46.2, E = 1.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ +e+++
CP000494_3 507 AWGDVARRIAHEIKNPLTPIQLSAERIRRKFG------KVITEDKAV 547

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +eti r+++ ++r+++++ ++r+ +
CP000494_3 548 ---------FEQCTETIVRQVDDIRRMVDEFSRFARMPKP 578

CP000494_5004: domain 1 of 1, from 567 to 633: score 43.7, E = 8.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g + +L e + ++ +++
CP000494_5 567 AVGQLTGGVAHDFNNILTVITGSIGILAE---------SVADRPEL- 603

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i+++a+r rL ++lL ++r +
CP000494_5 604 ----------ASLAKLIDDSADRGARLTQQLLAFARKQPL 633

CP000494_5652: domain 1 of 1, from 165 to 230: score 42.9, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ la++ H+LR+PL + ++ elL + + +++
CP000494_5 165 AKSRSLAAACHDLRQPLQNLVLLQELLAK---------EVVGDKA-- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e++++++ ++ ++n lLdl rie+g
CP000494_5 201 ----------EDLVERLDQALGNMSGMLNGLLDLNRIETG 230

CP000494_2263: domain 1 of 1, from 192 to 257: score 42.3, E = 2.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +I+g +++L + ++ ++
CP000494_2 192 AIGRLTGGVAHDFNNLLMVISGGLDMLDR---------QADPARR-- 227

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + ++++a+r +L ++lL +sr ++
CP000494_2 228 ----------RRLMDGMIQAAQRGASLTRQLLAFSRRQEL 257

CP000494_5880: domain 1 of 1, from 121 to 187: score 41.3, E = 4.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g++e+L + + ++ +q+
CP000494_5 121 AIGQLTGGVAHDFNNILTVITGTIEILAD---------AVKDRPQL- 157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +aer +L + lL +sr +
CP000494_5 158 ----------ASIANMISAAAERGADLTRHLLAFSRRQPL 187

CP000494_5835: domain 1 of 1, from 253 to 311: score 41.0, E = 5.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTPLt +r+ +e ++
CP000494_5 253 DRTKMLAAISHDLRTPLTRMRLRCEFVED------------------ 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l +++++ ++ +L + r +
CP000494_5 282 ----------ELQRSRMLADLDQMHTMLGSVLSFLRNGRK 311

CP000494_0673: domain 1 of 1, from 352 to 421: score 40.6, E = 6.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e l +++H+L++PL +I+g +e+L e ++ t +s + +
CP000494_0 352 FKNEILGTVAHDLKNPLGVILGRTEMLTE------LIATGASRDGV- 391

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e i+++a+rl ++++ l + ++a
CP000494_0 392 ----------TTQIEHIRDAAKRLTSMVDHLISDAMADAF 421

CP000494_2617: domain 1 of 1, from 274 to 345: score 40.2, E = 8.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HEL++PL+aI+ y + ++ +lag+++ + ++
CP000494_2 274 AMGEMASALAHELNQPLAAISNYMKGSRR----LLAGSSDPNTGKI- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ ++a r ++i++l+d+ ++
CP000494_2 316 ----------ESAMDRAAEQAIRAGQIIRRLRDFVSRGES 345

CP000494_3260: domain 1 of 1, from 230 to 288: score 39.5, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+++H+LRTPL+++r+ +e+ t s+
CP000494_3 230 MQRQFTADAAHQLRTPLAVLRTRIET------------TGPSAGS-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+++ r++r++ +lL+++ +++
CP000494_3 263 --------------AELLDDIARMSRIVHQLLEIAELDTL 288

CP000494_7364: domain 1 of 1, from 160 to 226: score 39.5, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g++e+L e + ++ +q+
CP000494_7 160 AIGQLTGGVAHDFNNILTVITGTIEILAE---------AVKDRPQL- 196

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i ++a r +L lL ++r +
CP000494_7 197 ----------VQITSLINSAAARGADLTKHLLAFARRQPL 226

CP000494_6286: domain 1 of 1, from 244 to 306: score 39.3, E = 1.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++ H+LRTPL+aI + +elL + ++++++
CP000494_6 244 LMQRFIADATHQLRTPLAAIDAEVELLTD---------QTRDPKA-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ + l rL ++lLd + i++
CP000494_6 280 -------------LDKLRGRIADLARLASQLLDHAMIQHR 306

CP000494_7010: domain 1 of 1, from 179 to 249: score 38.2, E = 3.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e a+++HEL++PLta++++a ++ ++ ++e + +q+
CP000494_7 179 TLGEISASIAHELNQPLTAVITNANAATRWI------RSEPPNPQK- 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e+i ++a+r +++i +++ l+ ++
CP000494_7 219 ---------VTSSIESIVEDARRASEIIARIRALTTRAEP 249

CP000494_4093: domain 1 of 1, from 226 to 292: score 38.1, E = 3.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ L +++ yae+L+e + l+++ r
CP000494_4 226 AVGVLAGGIAHDFNNLLVVMMIYAEMLRE---------ECLGDDPR- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++er ++L ++lL +sr +
CP000494_4 263 ----------LPDVMELIKAIERGRDLTRQLLAFSRKQPA 292

CP000494_5816: domain 1 of 1, from 240 to 298: score 37.9, E = 3.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTPLt +r+ ++ +
CP000494_5 240 DRTRMLAAISHDLRTPLTRLRLRSDRIGH------------------ 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +lr++++ +r++++ Ld+ r ++
CP000494_5 269 ----------GDMRAAMLRDIDQVSRMLDETLDYLRDDTK 298

CP000494_0507: domain 1 of 1, from 824 to 890: score 37.7, E = 4.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g++e+L + + + e+q+
CP000494_0 824 AIGQLTGGIAHDFNNILTVITGTIEILAA---------AVAKEPQL- 860

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i+++a r +L + lL ++r +
CP000494_0 861 ----------AAITRMIDEAAARGADLTQHLLAFARRQPL 890

CP000494_3985: domain 1 of 1, from 378 to 444: score 37.6, E = 4.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt I g +e+L + t ++ + +
CP000494_3 378 AIGKLTGGVAHDFNNMLTIITGSIEVLID---------TVQDRPAA- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ i r+a+r+ +Li+ lL ++r +
CP000494_3 415 ----------AELAALISRAADRCTELIRHLLAFARKQPL 444

CP000494_1080: domain 1 of 1, from 1 to 61: score 37.3, E = 5.8e-10
*->lanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRl
+a +HE RTPLt+I++ ++lL + +el+e +
CP000494_1 1 MAVFAHEVRTPLTGILAISDLLAT---------SELGERE------- 31

edpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ti+ ae+l++L + d ++ e+
CP000494_1 32 -----RRWVDTIKAGAEHLSSLATLFVDAAKDETT 61

CP000494_5148: domain 1 of 1, from 507 to 573: score 34.1, E = 4.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L+aI+++ + Ll+ ++ +++
CP000494_5 507 MVGQLAGGIAHDFNNVLSAIMMANDFLLN--------AHKPTDPS-- 543

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a r L+++lL +sr ++
CP000494_5 544 ----------FQDIMQIKQNATRAATLVRQLLAFSRRQTL 573

CP000494_7199: domain 1 of 1, from 214 to 280: score 34.1, E = 4.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I + + L++ + ++ q+
CP000494_7 214 QLDGLAAAAAHELGTPLATIVLISRELER---------ALQDNSQV- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++t++++a+r+++++ + +ls ++
CP000494_7 251 ----------TSDIKTLREQAQRCRDILGKITQLSSTGSM 280

CP000494_3984: domain 1 of 1, from 378 to 444: score 30.9, E = 3.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt I g++e+L ee+ +++++
CP000494_3 378 AIGKLTGGVAHDFNNMLTIITGTIETLAEEV-------QDRPAAA-- 415

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i ++a+r+ +Li+ lL ++r +
CP000494_3 416 -----------ATAALIGQAADRCTELIRHLLAFARKQPL 444

CP000494_1899: domain 1 of 1, from 211 to 306: score 28.8, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldk......v.lagdte
++++++a+++HEL++P++ + g++++L + ++++ + +++ ++++
CP000494_1 211 SLGRLVAGVAHELNNPISFVYGNIHTLMR--YRtslvgyLdAVHEQP 255

lseeqrlpeLR..l....edpeyreyletilreaerllrLindlLdlsri
+e + +LR++l+ + + ++e l+ a r+++++ +l+ ls
CP000494_1 256 VADELA--ALRsdLridaILEDFGPLIEGTLEGAVRISEIVKNLRRLSFS 303

eag<-*
g
CP000494_1 304 KLG 306

CP000494_0497: domain 1 of 1, from 32 to 98: score 28.2, E = 2.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l H++++ Lt+I g++++L e + + +++
CP000494_0 32 IVGQVAGGLLHDFNNILTVITGTIDILAE---------AVEDRPEL- 68

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+++a r r+ +lL ++r + +
CP000494_0 69 ----------AAVARLIDEAATRGARMTAQLLSFARGRPP 98


Histogram of all scores:
score obs exp (one = represents 25 sequences)
----- --- ---
-15 7 0|=
-14 17 0|=
-13 87 5|*===
-12 315 168|======*======
-11 679 876|============================ *
-10 1240 1626|================================================== *
-9 1435 1679|==========================================================*
-8 1280 1257|==================================================*=
-7 939 792|===============================*======
-6 553 455|==================*====
-5 337 250|=========*====
-4 204 133|=====*===
-3 109 70|==*==
-2 52 37|=*=
-1 30 19|*=
0 19 10|*
1 13 5|*
2 5 2|*
3 4 1|*
4 2 0|=
5 3 0|=
6 2 0|=
7 2 0|=
8 0 0|
9 0 0|
10 1 0|=
11 0 0|
> 12 59 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 1660.3975
P(chi-square) = 0

Total sequences searched: 7394

Whole sequence top hits:
tophits_s report:
Total hits: 52
Satisfying E cutoff: 52
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 53
Satisfying E cutoff: 53
Total memory: 42K


Acknowledgements:

This research is funded by:

Developed by: