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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Shewanella sp. W3-18-1  

Data for CP000503  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000503.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000503_0799 CDS_901218-906533 103.8 4.4e-29 1
CP000503_0639 CDS_700473-704177 99.2 9.1e-28 1
CP000503_1235 CDS_1410272-1407471 92.5 7.1e-26 1
CP000503_2770 CDS_3215827-3214529 77.6 1.2e-21 1
CP000503_3855 CDS_4474929-4478498 74.7 7.8e-21 1
CP000503_3978 CDS_4628753-4629799 67.5 8.7e-19 1
CP000503_0864 CDS_978652-981312 60.2 9.9e-17 1
CP000503_0221 CDS_246847-245801 59.6 1.5e-16 1
CP000503_4019 CDS_4678486-4679580 54.0 5.6e-15 1
CP000503_1912 CDS_2226766-2228160 52.0 2.1e-14 1
CP000503_3118 CDS_3608326-3609594 50.7 5.1e-14 1
CP000503_0215 CDS_241393-240044 49.8 9.2e-14 1
CP000503_2259 CDS_2635426-2637585 48.9 1.6e-13 1
CP000503_0106 CDS_131966-130650 48.5 2.1e-13 1
CP000503_1414 CDS_1611061-1612143 47.5 4e-13 1
CP000503_1644 CDS_1910019-1913456 46.6 7.1e-13 1
CP000503_1490 CDS_1706517-1704706 44.7 2.5e-12 1
CP000503_3289 CDS_3804312-3803017 43.8 4.6e-12 1
CP000503_0076 CDS_93034-95157 43.5 5.5e-12 1
CP000503_0609 CDS_668879-671032 42.9 7.8e-12 1
CP000503_3468 CDS_4001341-3999359 32.7 6.1e-09 1
CP000503_0250 CDS_274994-276250 31.9 1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000503_0799 1/1 1039 1104 .. 1 87 [] 103.8 4.4e-29
CP000503_0639 1/1 721 786 .. 1 87 [] 99.2 9.1e-28
CP000503_1235 1/1 298 363 .. 1 87 [] 92.5 7.1e-26
CP000503_2770 1/1 205 271 .. 1 87 [] 77.6 1.2e-21
CP000503_3855 1/1 701 767 .. 1 87 [] 74.7 7.8e-21
CP000503_3978 1/1 127 195 .. 1 87 [] 67.5 8.7e-19
CP000503_0864 1/1 658 726 .. 1 87 [] 60.2 9.9e-17
CP000503_0221 1/1 126 191 .. 1 87 [] 59.6 1.5e-16
CP000503_4019 1/1 134 198 .. 1 87 [] 54.0 5.6e-15
CP000503_1912 1/1 249 315 .. 1 87 [] 52.0 2.1e-14
CP000503_3118 1/1 200 269 .. 1 87 [] 50.7 5.1e-14
CP000503_0215 1/1 235 297 .. 1 87 [] 49.8 9.2e-14
CP000503_2259 1/1 498 563 .. 1 87 [] 48.9 1.6e-13
CP000503_0106 1/1 233 293 .. 1 87 [] 48.5 2.1e-13
CP000503_1414 1/1 136 202 .. 1 87 [] 47.5 4e-13
CP000503_1644 1/1 783 849 .. 1 87 [] 46.6 7.1e-13
CP000503_1490 1/1 378 446 .. 1 87 [] 44.7 2.5e-12
CP000503_3289 1/1 214 279 .. 1 87 [] 43.8 4.6e-12
CP000503_0076 1/1 467 534 .. 1 87 [] 43.5 5.5e-12
CP000503_0609 1/1 494 562 .. 1 87 [] 42.9 7.8e-12
CP000503_3468 1/1 420 489 .. 1 87 [] 32.7 6.1e-09
CP000503_0250 1/1 208 272 .. 1 87 [] 31.9 1e-08

Alignments of top-scoring domains:
CP000503_0799: domain 1 of 1, from 1039 to 1104: score 103.8, E = 4.4e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l t+l+ +q
CP000503_0 1039 AKGDFLANMSHEIRTPMNAIIGMSQLCLQ---------TALDKKQ-- 1074

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+r++++ll++ind+Ld+s+ieag
CP000503_0 1075 ----------KNYVEKIERASQSLLSIINDILDFSKIEAG 1104

CP000503_0639: domain 1 of 1, from 721 to 786: score 99.2, E = 9.1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP000503_0 721 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTPQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++ +a++llr+ind+Ld+s+ieag
CP000503_0 757 ----------KDYLEKAGFSAQSLLRIINDILDFSKIEAG 786

CP000503_1235: domain 1 of 1, from 298 to 363: score 92.5, E = 7.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
CP000503_1 298 IKSEFLANMSHELRTPLNGVIGFARQLVK---------TPLHSSQ-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll++ind+Ld+s++eag
CP000503_1 334 ----------VDYINTIERSATNLLAIINDILDFSKLEAG 363

CP000503_2770: domain 1 of 1, from 205 to 271: score 77.6, E = 1.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ + ++ +
CP000503_2 205 MRKEFVANVSHELKTPLTVLQGYLEMMQS---------MAEPDSMN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++++r+++++++lL lsrie
CP000503_2 242 ----------VKPLALMQQQTQRMQSMVEQLLVLSRIEDA 271

CP000503_3855: domain 1 of 1, from 701 to 767: score 74.7, E = 7.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++aI+g++el l +t+ +
CP000503_3 701 AKSTFLATMSHEIRTPMNAIIGMLELVLQ--------RTNSQQFD-- 737

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++a+ ll+Li d+Ld++rieag
CP000503_3 738 ----------LNSIKVAYDSANDLLELIGDILDIARIEAG 767

CP000503_3978: domain 1 of 1, from 127 to 195: score 67.5, E = 8.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L+e++ ++ls+ q+
CP000503_3 127 LRNSILLSVSHDLRTPLATIIGTLTTLKEYM-------PKLSPSQK- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++++ e++rl + i++lL+ +++++g
CP000503_3 166 ----------DELIDSAAAESHRLHQYIENLLQATKLQHG 195

CP000503_0864: domain 1 of 1, from 658 to 726: score 60.2, E = 9.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+L+ PL+a++g+ae L+ + + l ++
CP000503_0 658 LRSALLSSVSHDLKSPLSAMMGAAESLKL------LNKQLLEADR-- 696

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+til+e++rl++ i++lLd++r+++g
CP000503_0 697 ----------NELLDTILQESRRLDSYIQNLLDMTRLGHG 726

CP000503_0221: domain 1 of 1, from 126 to 191: score 59.6, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el+++ +
CP000503_0 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELDDPAQ- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ i+++a+rl++L+++lL r +
CP000503_0 162 ----------KEFTTLIIEQADRLRNLVDRLLGPQRPTQH 191

CP000503_4019: domain 1 of 1, from 134 to 198: score 54.0, E = 5.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + a+++HELRTP+t +rg ++ L e + s+
CP000503_4 134 EREFWNAAIAHELRTPVTILRGRLQGLAE---------GVFSPSS-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e +lr++e l++Li+dl+ ls ++g
CP000503_4 170 -----------ELFEGLLRQVEGLNHLIEDLRVLSLNDSG 198

CP000503_1912: domain 1 of 1, from 249 to 315: score 52.0, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL+TPL++I+++ + L+ +++q+
CP000503_1 249 RERRFSADAAHELKTPLSVIKLHQHGLES---------LIGDDPQQ- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l i+ + ++++ +++lL l+r ++
CP000503_1 286 ----------RFHLAAIDAGVVHMSHTVEQLLVLARVDSI 315

CP000503_3118: domain 1 of 1, from 200 to 269: score 50.7, E = 5.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ ++ ++ s+eq++
CP000503_3 200 NQKHLSNAVSHEIRTPLARLKFALALMPMYC-------QPDSDEQKR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ +++L+++lL+++ +e++
CP000503_3 240 ----------QDFLDEMQLDIKEMEDLLQELLTYASLESQ 269

CP000503_0215: domain 1 of 1, from 235 to 297: score 49.8, E = 9.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++ + l+++ + ++ e+
CP000503_0 235 NQQRLMGDISHELRTPLTRLQLSLALARK--------KGQQTTET-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i eae+l++Li +lL+lsr +
CP000503_0 272 --------------DRIGYEAEQLEKLIAELLELSRVKLN 297

CP000503_2259: domain 1 of 1, from 498 to 563: score 48.9, E = 1.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L ++l+ +
CP000503_2 498 YLENMSSRLSHELRTPVAVVRSSLEHLNL---------QTLDQDA-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
CP000503_2 534 ----------QKYVDRAQEGVSRLSMMLNNMSEATRLEQS 563

CP000503_0106: domain 1 of 1, from 233 to 293: score 48.5, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000503_0 233 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++i+++ + r +++
CP000503_0 264 ----------QYLKDGIVNDIEDMDAIISQFIAYIRQDQE 293

CP000503_1414: domain 1 of 1, from 136 to 202: score 47.5, E = 4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya+ L ++ls+ +
CP000503_1 136 ALGKMVATLAHQVRTPLSAALLYASNLAS---------PKLSDSAK- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ + ++ l+r++nd+L +++ ++
CP000503_1 173 ----------IKFQQKLVDRLNELERQVNDMLLMAKGRQD 202

CP000503_1644: domain 1 of 1, from 783 to 849: score 46.6, E = 7.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000503_1 783 SKSRFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDREA-- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP000503_1 820 ----------RTTLSHVNSSLKIAGELLTDLLDISKLDSG 849

CP000503_1490: domain 1 of 1, from 378 to 446: score 44.7, E = 2.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HEL++PL+a+r ya+ +++l ++ ++
CP000503_1 378 VIGSLSASINHELNQPLAALRSYAQNTQTFLA------RDMQDKA-- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i++ ++rl +++ ++ ++r +g
CP000503_1 417 ----------QDNLKIIIELTDRLADIVGQFKSFTRKSQG 446

CP000503_3289: domain 1 of 1, from 214 to 279: score 43.8, E = 4.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++sH+L+TP++ +r+ + +L+e ++se+ r
CP000503_3 214 DNKLLSRAVSHDLKTPIARLRFGIAALEE----------TQSEQLR- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++++ r+++ +++L+ lL ++r+++
CP000503_3 250 ----------VKYFQRLNRDLDTMEDLVMTLLSYARLDEA 279

CP000503_0076: domain 1 of 1, from 467 to 534: score 43.5, E = 5.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ el++ el ++ +
CP000503_0 467 ALGELTAGIAHEINNPTAVILGNMELMRYEL-------GDNADLV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
CP000503_0 505 ----------KEEIDLVIQQVMRISTIIRSLLQYSRPGEF 534

CP000503_0609: domain 1 of 1, from 494 to 562: score 42.9, E = 7.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I +++ L e+l + + e +
CP000503_0 494 ELDRFAYIASHDLKSPLRGIEQLTSWLAEDL-------VDNTNENV- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++ ++r+ L++ lL +sri+
CP000503_0 533 ----------QKYLGLIQNRIHRMVLLLDGLLMFSRIGRV 562

CP000503_3468: domain 1 of 1, from 420 to 489: score 32.7, E = 6.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ a+lsHEL++PL+aI y++ ++ +l ++++ +ee
CP000503_3 420 IAGELGASLSHELNQPLAAIGHYCHGAEVRL-----QRGTSPEEL-- 459

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i++e+ r +++i++l+ l + +
CP000503_3 460 ----------QSVLALIQQEVTRADSIISRLRNLLKKRPV 489

CP000503_0250: domain 1 of 1, from 208 to 272: score 31.9, E = 1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ Ir +e L +++ ++ se
CP000503_0 208 AVRGATDNIAHDLRTPLSHIRIGLEELATKSH------DDISEGC-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e++++l+ + +L l+rie+g
CP000503_0 247 --------------AILIEELDHCLATFDAMLSLTRIEEG 272


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 2 0|=
-14 3 0|=
-13 45 3|*===
-12 176 92|======*======
-11 368 479|=========================== *
-10 686 889|================================================= *
-9 768 918|======================================================= *
-8 699 687|=================================================*
-7 535 433|==============================*========
-6 288 249|=================*===
-5 208 136|=========*=====
-4 94 73|=====*=
-3 67 38|==*==
-2 28 20|=*
-1 23 10|*=
0 10 5|*
1 7 2|*
2 3 1|*
3 0 0|
4 2 0|=
> 5 32 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 287.2693
P(chi-square) = 0

Total sequences searched: 4044

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: