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Classification of phyla is from NCBI page
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2 accessions found for Nocardioides sp. JS614  

Data for CP000509  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000509.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000509_1356 CDS_1470718-1467785 92.2 1e-25 1
CP000509_1633 CDS_1778561-1776309 90.2 3.6e-25 1
CP000509_1083 CDS_1184540-1181997 88.4 1.2e-24 1
CP000509_4258 CDS_4555839-4559111 88.4 1.2e-24 2
CP000509_1937 CDS_2108981-2105763 86.3 4.5e-24 1
CP000509_1712 CDS_1860168-1861976 84.9 1.2e-23 1
CP000509_1304 CDS_1412168-1414216 83.6 2.6e-23 1
CP000509_1893 CDS_2062938-2064545 82.7 4.8e-23 1
CP000509_2418 CDS_2623205-2624233 81.1 1.4e-22 1
CP000509_0186 CDS_204369-202837 80.5 2.1e-22 1
CP000509_3646 CDS_3922347-3923756 79.3 4.5e-22 1
CP000509_4264 CDS_4564918-4566720 78.6 7e-22 1
CP000509_1888 CDS_2058979-2056217 77.2 1.7e-21 1
CP000509_2807 CDS_3028888-3026750 73.7 1.7e-20 1
CP000509_0242 CDS_260992-259106 72.7 3.3e-20 1
CP000509_3992 CDS_4268193-4269347 70.0 2e-19 1
CP000509_1891 CDS_2060803-2062074 68.4 5.7e-19 1
CP000509_1824 CDS_1988488-1989603 67.3 1.2e-18 1
CP000509_0189 CDS_206511-208160 65.3 4.3e-18 1
CP000509_1967 CDS_2150239-2148713 64.8 5.9e-18 1
CP000509_1226 CDS_1335593-1337560 61.5 5e-17 1
CP000509_1398 CDS_1518715-1520349 60.8 7.6e-17 1
CP000509_4265 CDS_4566808-4568589 60.5 9.3e-17 1
CP000509_4467 CDS_4779074-4780489 60.0 1.4e-16 1
CP000509_2847 CDS_3079217-3080836 59.2 2.2e-16 1
CP000509_1563 CDS_1697792-1699153 59.1 2.3e-16 1
CP000509_2311 CDS_2510784-2512790 57.3 7.7e-16 1
CP000509_1575 CDS_1710386-1711744 51.4 3.7e-14 2
CP000509_0307 CDS_333454-334545 50.5 6.5e-14 1
CP000509_2890 CDS_3121203-3120118 48.5 2.4e-13 1
CP000509_1578 CDS_1713139-1714506 47.6 4.3e-13 1
CP000509_1524 CDS_1653915-1655375 45.1 2.3e-12 1
CP000509_4306 CDS_4609703-4611187 40.5 4.5e-11 1
CP000509_2022 CDS_2206622-2208067 34.5 2.2e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000509_1356 1/1 458 523 .. 1 87 [] 92.2 1e-25
CP000509_1633 1/1 87 152 .. 1 87 [] 90.2 3.6e-25
CP000509_1083 1/1 332 397 .. 1 87 [] 88.4 1.2e-24
CP000509_1937 1/1 419 484 .. 1 87 [] 86.3 4.5e-24
CP000509_4258 2/2 429 494 .. 1 87 [] 86.1 5.2e-24
CP000509_1712 1/1 314 382 .. 1 87 [] 84.9 1.2e-23
CP000509_1304 1/1 454 522 .. 1 87 [] 83.6 2.6e-23
CP000509_1893 1/1 312 378 .. 1 87 [] 82.7 4.8e-23
CP000509_2418 1/1 122 190 .. 1 87 [] 81.1 1.4e-22
CP000509_0186 1/1 267 335 .. 1 87 [] 80.5 2.1e-22
CP000509_3646 1/1 248 314 .. 1 87 [] 79.3 4.5e-22
CP000509_4264 1/1 375 441 .. 1 87 [] 78.6 7e-22
CP000509_1888 1/1 694 762 .. 1 87 [] 77.2 1.7e-21
CP000509_2807 1/1 486 552 .. 1 87 [] 73.7 1.7e-20
CP000509_0242 1/1 402 467 .. 1 87 [] 72.7 3.3e-20
CP000509_3992 1/1 148 214 .. 1 87 [] 70.0 2e-19
CP000509_1891 1/1 194 260 .. 1 87 [] 68.4 5.7e-19
CP000509_1824 1/1 145 213 .. 1 87 [] 67.3 1.2e-18
CP000509_0189 1/1 323 389 .. 1 87 [] 65.3 4.3e-18
CP000509_1967 1/1 282 346 .. 1 87 [] 64.8 5.9e-18
CP000509_1226 1/1 429 497 .. 1 87 [] 61.5 5e-17
CP000509_1398 1/1 295 362 .. 1 87 [] 60.8 7.6e-17
CP000509_4265 1/1 370 430 .. 1 81 [. 60.5 9.3e-17
CP000509_4467 1/1 244 315 .. 1 87 [] 60.0 1.4e-16
CP000509_2847 1/1 303 370 .. 1 87 [] 59.2 2.2e-16
CP000509_1563 1/1 237 302 .. 1 87 [] 59.1 2.3e-16
CP000509_2311 1/1 447 517 .. 1 87 [] 57.3 7.7e-16
CP000509_0307 1/1 142 206 .. 1 87 [] 50.5 6.5e-14
CP000509_1575 2/2 232 297 .. 1 87 [] 49.4 1.4e-13
CP000509_2890 1/1 141 205 .. 1 87 [] 48.5 2.4e-13
CP000509_1578 1/1 239 304 .. 1 87 [] 47.6 4.3e-13
CP000509_1524 1/1 242 308 .. 1 87 [] 45.1 2.3e-12
CP000509_4306 1/1 284 351 .. 1 87 [] 40.5 4.5e-11
CP000509_2022 1/1 242 302 .. 1 81 [. 34.5 2.2e-09

Alignments of top-scoring domains:
CP000509_1356: domain 1 of 1, from 458 to 523: score 92.2, E = 1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++++g++el+l+ t l+ +q
CP000509_1 458 AKSTFLATMSHEIRTPLNGVLGLTELMLT---------TRLDGQQ-- 493

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y e i+ ++e ll+ ind+Ld+s+ieag
CP000509_1 494 ----------GRYAEGIRVAGEALLQVINDILDFSKIEAG 523

CP000509_1633: domain 1 of 1, from 87 to 152: score 90.2, E = 3.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g++ lLl+ tel+e q
CP000509_1 87 AKSAFLATMSHEIRTPMNGVIGLTRLLLD---------TELDETQ-- 122

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y + + +++ ll Li+d+Ld+s+ieag
CP000509_1 123 ----------RRYAKGLSEAGTTLLTLIDDILDFSKIEAG 152

CP000509_1083: domain 1 of 1, from 332 to 397: score 88.4, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHE+RTP+++++g++ lL++ t+l+e q
CP000509_1 332 SKSTFLATMSHEIRTPMNGVIGLTGLLEA---------TDLDERQ-- 367

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y e + ++a+ l +ind+Ld+s+ eag
CP000509_1 368 ----------RQYAEGVSSAANALMTIINDILDFSKVEAG 397

CP000509_1937: domain 1 of 1, from 419 to 484: score 86.3, E = 4.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefla++sHE+RTPL++++g+ +lLl+ t+l+++q
CP000509_1 419 QKSEFLATMSHEIRTPLNGVIGLNDLLLR---------TPLDPDQ-- 454

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++ +++ ll ind+Ld+s+ieag
CP000509_1 455 ----------LRLASGVQVASRALLGVINDILDFSKIEAG 484

CP000509_4258: domain 2 of 2, from 429 to 494: score 86.1, E = 5.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla++sHE+RTP+++++g+++lLl +el++ q
CP000509_4 429 LKSEFLATMSHEIRTPMNGVIGLTDLLLL---------SELDDHQ-- 464

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e ++ ++ ll +ind+Ldls+ie+g
CP000509_4 465 ----------RRLAENLQGAGLTLLGIINDILDLSKIESG 494

CP000509_1712: domain 1 of 1, from 314 to 382: score 84.9, E = 1.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++n+sHELRTPLt+I+gy+el ee++ + +++++
CP000509_1 314 ARDDFVSNVSHELRTPLTTISGYLELVAEEFE------GRMDPPH-- 352

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le +r + rl +Li+dlL lsr+e
CP000509_1 353 ----------ERMLEATRRNVARLKALIDDLLALSRAEGR 382

CP000509_1304: domain 1 of 1, from 454 to 522: score 83.6, E = 2.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTP+t+I+gy+e+L+++++ ++l+ eq
CP000509_1 454 VKDAFVSSVSHELRTPITSILGYTEMLEDGVY------GDLGREQ-- 492

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ + rll+LindlL+lsr ++
CP000509_1 493 ----------LDAVRRVAANSTRLLSLINDLLTLSRVQED 522

CP000509_1893: domain 1 of 1, from 312 to 378: score 82.7, E = 4.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+a++sHELRTPLt+I gy+++Lle +++l+++
CP000509_1 312 VKDEFVASVSHELRTPLTSIVGYTQMLLE--------RDDLPADV-- 348

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++ r + rl rL+ dlL +r+++g
CP000509_1 349 ----------VAQLEVMARNSGRLHRLVADLLHTARLDEG 378

CP000509_2418: domain 1 of 1, from 122 to 190: score 81.1, E = 1.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+++a+++HELR PLt+++g++++Ll+ ++++ls++q+
CP000509_2 122 ERSDLVATVAHELRSPLTGVKGFVQALLN-------RWDKLSDDQK- 160

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+t+ +++rl+rLi +lLd +ri++g
CP000509_2 161 ----------KLMLRTVSADSDRLSRLIAELLDVARIDTG 190

CP000509_0186: domain 1 of 1, from 267 to 335: score 80.5, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f++n+sHELRTPLt++ gy+e+ +e++ + ls+ +
CP000509_0 267 AKDDFVSNVSHELRTPLTTLNGYLEMVHDEFE------GRLSPRH-- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +t +r ++rl Li+dlL+lsr e+
CP000509_0 306 ----------QKMMDTSQRNVDRLKTLIEDLLTLSRSETK 335

CP000509_3646: domain 1 of 1, from 248 to 314: score 79.3, E = 4.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELR PL++I gy+el+++ ++e ++
CP000509_3 248 QVRQFVADASHELRSPLATIAGYTELARR--------RPEDGAAI-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++++e+ r+ +L++dlL l+r++ag
CP000509_3 285 ----------ETALDKVEEESGRMTSLVEDLLLLARLDAG 314

CP000509_4264: domain 1 of 1, from 375 to 441: score 78.6, E = 7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++++a+++HEL++PLt+++g++e+L+ +++l+ +
CP000509_4 375 YKGQLIATVAHELKNPLTSVMGHLEMLES--------SPDLTGTT-- 411

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ ++r a+r+ r i+dlL ls+ + +
CP000509_4 412 ----------RTSLNAMDRGARRMVRVIEDLLLLSKVGDP 441

CP000509_1888: domain 1 of 1, from 694 to 762: score 77.2, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksef++++sHELRTP+++I gy+elL++ + + +eq
CP000509_1 694 AKSEFVSTVSHELRTPVASIVGYTELLED------GTVVDPAPEQ-- 732

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le+i r ++rl L +dlL+ls +++g
CP000509_1 733 ----------RPMLESIARNGQRLILLCDDLLTLSGLDSG 762

CP000509_2807: domain 1 of 1, from 486 to 552: score 73.7, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+a++sHELRTPLt+++g++elL e +++l++e
CP000509_2 486 VKDEFVASVSHELRTPLTSVLGHLELLGE--------RDDLTDEV-- 522

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++r a rl++L++dlL + +i g
CP000509_2 523 ----------AAQLRVVQRNAARLQALLSDLLLIGQIADG 552

CP000509_0242: domain 1 of 1, from 402 to 467: score 72.7, E = 3.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+++a+lsHELRTPLt+I+g++elL + l+e
CP000509_0 402 YRSQLIATLSHELRTPLTVISGNLELLGD---------LSLDETA-- 437

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y e + r + r+++ ++dlL l+r +
CP000509_0 438 ----------QHYQEAMTRGTTRMQKVVDDLLLLARVSDP 467

CP000509_3992: domain 1 of 1, from 148 to 214: score 70.0, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ aIr++ae+ + ++ ++e +
CP000509_3 148 VRRDFVANVSHELKTPVGAIRLLAEAVHD---------AAEDPEAV- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++l e++rl+rL++++ +lsr++
CP000509_3 185 ----------KRFSDRMLTESDRLSRLVQQVIELSRLQGD 214

CP000509_1891: domain 1 of 1, from 194 to 260: score 68.4, E = 5.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a +sHELRTPLt+I gy+ ++le +++l++
CP000509_1 194 VKEDFVALVSHELRTPLTSIVGYVAVALE--------RDDLDPVL-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ ++r ++rl+rL++dlLd +
CP000509_1 231 ----------RTQLDAVDRNGKRLERLVQDLLDEVQHSGR 260

CP000509_1824: domain 1 of 1, from 145 to 213: score 67.3, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++ H+LRTPL++ ++ ++ L+ ++ +l e++r
CP000509_1 145 LRTALLAAVGHDLRTPLATAKAVVSGLRS-------REVTLAEDDR- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+let++++++rl +Li+dlLdlsr++ag
CP000509_1 184 ----------HELLETADDALDRLADLIDDLLDLSRLQAG 213

CP000509_0189: domain 1 of 1, from 323 to 389: score 65.3, E = 4.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+a++sHELRTPLt+I gy+ +Lle d++ls++
CP000509_0 323 VKEEFVATVSHELRTPLTSIVGYVAILLE--------DDTLSAQA-- 359

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++r a rl +L++ lL+ + g
CP000509_0 360 ----------VAQLRVVDRNAARLTALVEALLQEAHHADG 389

CP000509_1967: domain 1 of 1, from 282 to 346: score 64.8, E = 5.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++efl ++ HELRTPLt++rg++elL + ++e
CP000509_1 282 GQREFLDDAGHELRTPLTVLRGHLELLDT----------GDPAEV-- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e e +l+e++r++rL+ dl l++ + +
CP000509_1 317 ----------AETKELLLDEVDRMSRLVGDLILLAKSDRP 346

CP000509_1226: domain 1 of 1, from 429 to 497: score 61.5, E = 5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ fla +HELRTP+ ++ g+ae+L + + +el++e+r
CP000509_1 429 DQAHFLAVTAHELRTPVGVLAGTAEMLAA-------HADELDAEER- 467

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le + ++a rl+rL+ dlL+ sr++a
CP000509_1 468 ----------HELLEGMGSSAARLRRLLADLLTASRLQAS 497

CP000509_1398: domain 1 of 1, from 295 to 362: score 60.8, E = 7.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++ ++L + ++ ++ +
CP000509_1 295 VQRRFVSDVSHELRTPLTTVRMAGDVLHD-------ARAGFDPAT-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e ++ e++r + L+ dlL++sr +a
CP000509_1 333 ----------ARAAELLQTELDRFEVLLADLLEISRFDAR 362

CP000509_4265: domain 1 of 1, from 370 to 430: score 60.5, E = 9.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++++a++sHEL++PL+aI+gyae+L ++ ls+
CP000509_4 370 YKGRLVATVSHELKNPLSAILGYAEILAG--------EPGLSDAA-- 406

peLRledpeyreyletilreaerllrLindlLdl<-*
r + i+r + rl r ++dlL l
CP000509_4 407 ----------RACVAAIERGGGRLARVVDDLLLL 430

CP000509_4467: domain 1 of 1, from 244 to 315: score 60.0, E = 1.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a++ HELRTPLt++r++++lL ++++ +++
CP000509_4 244 RQRQLVADAGHELRTPLTSLRTNLDLLGQ---------ADRGGVDLP 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+R +e+l+ + ++e + Li dl++l+r e
CP000509_4 282 SEAR------AELLDDVAAQIEEMTTLIGDLMELARDEPL 315

CP000509_2847: domain 1 of 1, from 303 to 370: score 59.2, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ +++HELRTPLt+I+gy+elL +++ + ++e+
CP000509_2 303 VRESFITTVAHELRTPLTSILGYVELLVDDV-------DGRGEDL-- 340

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+++a rl++ i +lLd + +
CP000509_2 341 ----------ERTARRIDEAATRLRDRITELLDTADRHRQ 370

CP000509_1563: domain 1 of 1, from 237 to 302: score 59.1, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++++sHELR PL++Ir +ae++++ ++ ++
CP000509_1 237 AQRQFASDASHELRSPLAVIRQLAEVARR---------HPDQADV-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ il e r+++L+ lL+l+r+e
CP000509_1 273 ----------VTLTNEILAEEGRMEELVAALLTLARLEDR 302

CP000509_2311: domain 1 of 1, from 447 to 517: score 57.3, E = 7.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++H+LR+PL+aI g +e++ +eld +++ls++ +
CP000509_2 447 ELAAFAGVVAHDLRNPLAAIDGWTEMIADELD-----SGNLSADLA- 487

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++++++++++r+++Li+dlL + + +
CP000509_2 488 ----------RDFVSRVRSSSRRMRELIRDLLAHATASQR 517

CP000509_0307: domain 1 of 1, from 142 to 206: score 50.5, E = 6.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la+l+HE+RTPL++I +++e+ ++++ +l++++
CP000509_0 142 TRRRMLADLAHEMRTPLATIEAHLEAVEDGV-------RPLDADT-- 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i +++ r++rL +d+ s +e+g
CP000509_0 180 -------------LAVIGSATSRMRRLAEDVAAVSTAEEG 206

CP000509_1575: domain 2 of 2, from 232 to 297: score 49.4, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sH+L PL+a r ++e++l+ t+ + +
CP000509_1 232 RQRDFVADVSHDLQSPLAAQRVALEVALT---------TPDTVDA-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +l ++ ++rL+ dlL ++ +a
CP000509_1 268 ----------VRLRDDVLGATADMERLVADLLVIASVDAR 297

CP000509_2890: domain 1 of 1, from 141 to 205: score 48.5, E = 2.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l ++HE+RTPLt++ gy+e + + + ++q
CP000509_2 141 RRTRLLGEVAHEMRTPLTSLDGYVEGMID---------GVFAADQ-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++ e++rl rL +dl dlsr e+
CP000509_2 177 -----------ATLASLSVELRRLHRLADDLSDLSRTEER 205

CP000509_1578: domain 1 of 1, from 239 to 304: score 47.6, E = 4.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELR PL++Ir+ e++ + ++++
CP000509_1 239 SQRQFVADASHELRSPLATIRAVHEIAVL----------HPDAQD-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + +l e++r +rL+ dl l+r+++
CP000509_1 274 ---------WDQANREVLGELDRVDRLVADLVLLARADER 304

CP000509_1524: domain 1 of 1, from 242 to 308: score 45.1, E = 2.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ +sHELRTP+t + ++l+l+ ++s+ ++
CP000509_1 242 RERQFVTEASHELRTPITLLTSRIQLALR---------RPRSPADH- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ +++rl +L ++lL+l r + +
CP000509_1 279 ----------ERILTELKVDLDRLAALSEQLLQLGRVDGN 308

CP000509_4306: domain 1 of 1, from 284 to 351: score 40.5, E = 4.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+ +HE+R P+++I g+ae+L+ ++ls ++
CP000509_4 284 LLRRAIATSAHEIRGPVAVICGTAETLQL--------APDLSQREL- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e++ r+a+ l+ + dlL+ ++i+ g
CP000509_4 322 ----------HRMAESMARQARILDGITADLLTAAQIQRG 351

CP000509_2022: domain 1 of 1, from 242 to 302: score 34.5, E = 2.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ +sHELRTP+t + ++l+++ +++ +++
CP000509_2 242 RERQFVNEASHELRTPITLLTSRVQLARR---------RPRTQQEH- 278

peLRledpeyreyletilreaerllrLindlLdl<-*
++ le ++ +++rl rL ++lL+l
CP000509_2 279 ----------ERVLEELQVDLDRLARLAEQLLEL 302


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 34 3|*=
-12 167 106|======*===
-11 390 550|======================= *
-10 803 1021|================================================ *
-9 947 1054|======================================================== *
-8 807 789|==============================================*=
-7 623 497|=============================*=======
-6 368 286|================*=====
-5 201 157|=========*==
-4 115 84|====*==
-3 67 44|==*=
-2 40 23|=*=
-1 20 12|*=
0 9 6|*
1 3 3|*
2 5 1|*
3 2 0|=
4 1 0|=
5 0 0|
6 1 0|=
7 0 0|
8 0 0|
> 9 38 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 247.7461
P(chi-square) = 0

Total sequences searched: 4645

Whole sequence top hits:
tophits_s report:
Total hits: 34
Satisfying E cutoff: 34
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 34
Satisfying E cutoff: 34
Total memory: 34K


Acknowledgements:

This research is funded by:

Developed by: