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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Psychromonas ingrahamii 37  

Data for CP000510  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000510.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000510_0948 CDS_1234628-1229904 92.5 6.3e-26 1
CP000510_0507 CDS_674860-672080 90.8 1.9e-25 1
CP000510_3145 CDS_4114195-4111289 89.5 4.4e-25 1
CP000510_3522 CDS_4531796-4535632 87.2 1.9e-24 1
CP000510_2013 CDS_2609678-2607030 82.0 6e-23 1
CP000510_2816 CDS_3683344-3679979 80.7 1.4e-22 1
CP000510_0465 CDS_615925-612158 80.2 1.9e-22 1
CP000510_2101 CDS_2715384-2714062 74.8 6.6e-21 1
CP000510_0808 CDS_1045338-1047137 69.0 2.9e-19 1
CP000510_0895 CDS_1157217-1159478 68.2 4.8e-19 1
CP000510_3299 CDS_4315368-4316438 62.2 2.4e-17 1
CP000510_0956 CDS_1246048-1247463 58.9 2.1e-16 1
CP000510_1188 CDS_1530017-1531450 57.0 7.4e-16 1
CP000510_1209 CDS_1560575-1562095 50.6 4.8e-14 1
CP000510_2387 CDS_3101778-3099250 47.1 4.5e-13 1
CP000510_1659 CDS_2128141-2129661 46.6 6.3e-13 1
CP000510_2641 CDS_3452707-3450197 41.1 2.3e-11 1
CP000510_0691 CDS_908374-906590 35.7 7.6e-10 1
CP000510_1914 CDS_2466718-2469735 33.2 4e-09 1
CP000510_1322 CDS_1693233-1692154 33.1 4.2e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000510_0948 1/1 826 891 .. 1 87 [] 92.5 6.3e-26
CP000510_0507 1/1 290 355 .. 1 87 [] 90.8 1.9e-25
CP000510_3145 1/1 438 503 .. 1 87 [] 89.5 4.4e-25
CP000510_3522 1/1 571 639 .. 1 87 [] 87.2 1.9e-24
CP000510_2013 1/1 366 431 .. 1 87 [] 82.0 6e-23
CP000510_2816 1/1 670 736 .. 1 87 [] 80.7 1.4e-22
CP000510_0465 1/1 622 687 .. 1 87 [] 80.2 1.9e-22
CP000510_2101 1/1 212 278 .. 1 87 [] 74.8 6.6e-21
CP000510_0808 1/1 375 442 .. 1 87 [] 69.0 2.9e-19
CP000510_0895 1/1 256 321 .. 1 87 [] 68.2 4.8e-19
CP000510_3299 1/1 133 198 .. 1 87 [] 62.2 2.4e-17
CP000510_0956 1/1 247 311 .. 1 87 [] 58.9 2.1e-16
CP000510_1188 1/1 253 318 .. 1 87 [] 57.0 7.4e-16
CP000510_1209 1/1 290 356 .. 1 87 [] 50.6 4.8e-14
CP000510_2387 1/1 478 543 .. 1 87 [] 47.1 4.5e-13
CP000510_1659 1/1 290 356 .. 1 87 [] 46.6 6.3e-13
CP000510_2641 1/1 470 536 .. 1 87 [] 41.1 2.3e-11
CP000510_0691 1/1 375 443 .. 1 87 [] 35.7 7.6e-10
CP000510_1914 1/1 633 699 .. 1 87 [] 33.2 4e-09
CP000510_1322 1/1 150 204 .. 1 83 [. 33.1 4.2e-09

Alignments of top-scoring domains:
CP000510_0948: domain 1 of 1, from 826 to 891: score 92.5, E = 6.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++aI+g++el l+ ++++++
CP000510_0 826 AKSEFLANMSHEIRTPMNAIIGLSELSLN---------QDMTPQL-- 861

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl++i++++++ll +in +Ld+s+ieag
CP000510_0 862 ----------RDYLSKIHSSGNSLLGIINGILDFSKIEAG 891

CP000510_0507: domain 1 of 1, from 290 to 355: score 90.8, E = 1.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a Ll+ t l+ q+
CP000510_0 290 VKSEFLANMSHELRTPLNGVIGFARQLLK---------TQLTTNQI- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+r+a ll++ind+Ld+s++eag
CP000510_0 327 -----------DYLQTIERSAGNLLKIINDILDFSKLEAG 355

CP000510_3145: domain 1 of 1, from 438 to 503: score 89.5, E = 4.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP+++++g++el le tels+eq
CP000510_3 438 AKSEFLATMSHEIRTPMNGVLGMTELVLE---------TELSSEQ-- 473

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e i++++ ll++ind+Ld+s+ieag
CP000510_3 474 ----------RRFMEMIKSSGFGLLDIINDILDFSKIEAG 503

CP000510_3522: domain 1 of 1, from 571 to 639: score 87.2, E = 1.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++ +++ L +++ ++l+eeq
CP000510_3 571 YKSEFLANMSHELRTPLNSLLILSQSLAKNSQ------GNLNEEQ-- 609

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++i++ +++ll+Lind+Ldls+ eag
CP000510_3 610 ----------QEDARVIYEGGQSLLALINDILDLSKVEAG 639

CP000510_2013: domain 1 of 1, from 366 to 431: score 82.0, E = 6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+RTPL++++g++e+L + ++l+ eq
CP000510_2 366 AKDSFLATMSHEIRTPLAGMLGMLEVLSM---------SPLDHEQ-- 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ + ++a+ llr++nd+Ld s+i+ g
CP000510_2 402 ----------EPILKAAWDSARNLLRIVNDILDWSKIQDG 431

CP000510_2816: domain 1 of 1, from 670 to 736: score 80.7, E = 1.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ la+lsHELRTPL++++gya+lL + d++l+ +q
CP000510_2 670 AKSRYLAGLSHELRTPLNVLLGYAQLLSR--------DPALPFKQ-- 706

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ +++r +e+l +Li+ lL++s+ieag
CP000510_2 707 ----------REIIGIVKRNGEHLADLIEGLLEISKIEAG 736

CP000510_0465: domain 1 of 1, from 622 to 687: score 80.2, E = 1.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++++g++++L+ + l q
CP000510_0 622 AKSQFLAAMSHEIRTPMNGVIGMVDVLQQ---------SSLKGFQ-- 657

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ti+++a +ll++i+d+Ld+s+ieag
CP000510_0 658 ----------VDMVDTIRDSAFSLLSIIEDILDFSKIEAG 687

CP000510_2101: domain 1 of 1, from 212 to 278: score 74.8, E = 6.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+++gy+e+L + + +++q+
CP000510_2 212 MRRRFVANVSHELRTPLTVLQGYIEILDM---------QLVDSPQQ- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +++++++r+ +L+++++ ls+ie
CP000510_2 249 ----------SKTLTILDQQTKRMCALVEQIMILSKIEGA 278

CP000510_0808: domain 1 of 1, from 375 to 442: score 69.0, E = 2.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+t+I+g+ae++l+ + +++e r
CP000510_0 375 VRRDFVANASHELKTPITVILGLAETILD--------YKDMPENMR- 412

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+ ++ rl++L+ dl+ +sr+e+
CP000510_0 413 ----------TRFMGDIQTQTLRLSSLVTDLMSISRLETT 442

CP000510_0895: domain 1 of 1, from 256 to 321: score 68.2, E = 4.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++++sHELRTPL++I g++ +Ll+ + l++eq
CP000510_0 256 EKTDFISSISHELRTPLNGIVGLSRMLLD---------EQLTSEQ-- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ti+ +a +l ++ +d+ l +++ +
CP000510_0 292 ----------MKHLKTIHISAISLGNIFSDIINLDKLDRN 321

CP000510_3299: domain 1 of 1, from 133 to 198: score 62.2, E = 2.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e++++l+HE+++PL ++rg+a+lL+ el ++++
CP000510_3 133 VAKELVRGLAHEIKNPLGGLRGAAQLLES----------ELADPEL- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++i+++a+rl++L+n+lL +++
CP000510_3 169 ----------KEFTQIIIEQADRLSALVNRLLGPQTLGER 198

CP000510_0956: domain 1 of 1, from 247 to 311: score 58.9, E = 2.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a++sHELRTP++++ +e++++ + + +e
CP000510_0 247 SREQWIADISHELRTPIAVLVSEIEAIED---------GIRKPEP-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++++++++ l+rL++dl +ls +ag
CP000510_0 283 -----------KYIKSLHEQVMNLSRLVDDLYQLSLSDAG 311

CP000510_1188: domain 1 of 1, from 253 to 318: score 57.0, E = 7.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HEL+TPL+++r+++e +l+ +e + q
CP000510_1 253 RERRFTRTAAHELKTPLAVLRLNIENALA---------SEDQASQ-- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ i r ++r +rLi++lL sriea
CP000510_1 289 ----------AYALNNIVRGVDRTDRLIQQLLMHSRIEAK 318

CP000510_1209: domain 1 of 1, from 290 to 356: score 50.6, E = 4.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++HE+R+PL++ + +a+ L e + l+ e r
CP000510_1 290 ALGVMAGGIAHEIRNPLAVCSSAAQFLME---------EGLPLEFR- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e+i+ ++e + +i++lL +sr ++
CP000510_1 327 ----------TECAEKIQVSLEKASCIIENLLRFSRPSSE 356

CP000510_2387: domain 1 of 1, from 478 to 543: score 47.1, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a +++++ + e + +++
CP000510_2 478 SKTKFLAAVSHDLLQPLNAAQLFTSSIVE---------KTVDAQL-- 513

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ ++++ l++Li l d+s+++ag
CP000510_2 514 ----------APLINSVSSSLDDLENLICTLVDISKLDAG 543

CP000510_1659: domain 1 of 1, from 290 to 356: score 46.6, E = 6.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++HE+R+PL++ + +a+ L e + l+ e r
CP000510_1 290 ALGVMAGGIAHEIRNPLAVCSSAAQFLME---------EGLPLEFR- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++i+ ++e + +i++lL +sr +
CP000510_1 327 ----------TECAKKIQVSLEKASCIIENLLRFSRPSCE 356

CP000510_2641: domain 1 of 1, from 470 to 536: score 41.1, E = 2.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sH++++ Lt+I+g+++lL+ + l++ q
CP000510_2 470 VLGKLTGGVSHDFNNFLTTILGNLQLLEL--------QPGLNDRQ-- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++l+++e +Li lL +s +
CP000510_2 507 ----------RKYLNRALKATEKGTELIKKLLAFSHNRFL 536

CP000510_0691: domain 1 of 1, from 375 to 443: score 35.7, E = 7.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a++sHEL++PL+aIr yae + +l+ ++ ++
CP000510_0 375 VLGQLSASISHELNNPLAAIRSYAENAIIFLE------RDKIDKV-- 413

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i ++r+ ++ ++l ++r +g
CP000510_0 414 ----------SNNLIRITYLTDRMAKISSQLKAFARKSNG 443

CP000510_1914: domain 1 of 1, from 633 to 699: score 33.2, E = 4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+ +l+H++++ L I+g+++l+ ++l e++++
CP000510_1 633 AIGELSGGLAHDFNNLLGIIIGNLDLMSRKL--------EAGSKL-- 669

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e let +++a r +L ++lL ++r a
CP000510_1 670 ----------LEQLETTQNAALRGADLTRRLLNFARHSAL 699

CP000510_1322: domain 1 of 1, from 150 to 204: score 33.1, E = 4.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sH+L+TPLt++r+ +e +
CP000510_1 150 DRTKMLSAISHDLKTPLTSLRLRLEFIAP------------------ 178

peLRledpeyreyletilreaerllrLindlLdlsr<-*
e ++l+ + ++++++ L +s+
CP000510_1 179 ----------GEDQARMLDTIAQMEEMLKATLAFSK 204


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 7 0|=
-13 46 2|*===
-12 145 81|======*=====
-11 349 420|=========================== *
-10 631 779|================================================= *
-9 711 805|======================================================= *
-8 608 602|==============================================*
-7 407 379|=============================*==
-6 293 218|================*======
-5 144 119|=========*==
-4 86 64|====*==
-3 41 33|==*=
-2 23 17|=*
-1 11 9|*
0 10 4|*
1 5 2|*
2 2 1|*
3 0 0|
4 0 0|
5 1 0|=
> 6 24 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 144.7711
P(chi-square) = 1.739e-25

Total sequences searched: 3545

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: