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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Mycobacterium vanbaalenii PYR-1  

Data for CP000511  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000511.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000511_4353 CDS_4753910-4752306 89.2 8.9e-25 1
CP000511_2258 CDS_2450792-2449284 80.2 3.3e-22 1
CP000511_0871 CDS_914487-913492 72.9 3.8e-20 1
CP000511_1725 CDS_1859952-1861595 71.9 7.1e-20 1
CP000511_5094 CDS_5538738-5537227 70.9 1.4e-19 1
CP000511_4684 CDS_5097500-5100052 64.7 7.7e-18 1
CP000511_0817 CDS_865743-866948 62.6 3.1e-17 1
CP000511_4765 CDS_5181295-5179841 61.7 5.4e-17 1
CP000511_2298 CDS_2495237-2493837 56.7 1.5e-15 1
CP000511_1900 CDS_2060449-2064606 55.9 2.5e-15 1
CP000511_2082 CDS_2260373-2261737 50.9 6.6e-14 1
CP000511_3611 CDS_3905561-3906700 48.6 3e-13 1
CP000511_4931 CDS_5362678-5364018 48.2 3.7e-13 1
CP000511_1804 CDS_1956085-1954898 47.2 7.4e-13 1
CP000511_0191 CDS_199238-200590 44.7 3.8e-12 1
CP000511_2942 CDS_3159487-3161076 44.2 5.2e-12 1
CP000511_3770 CDS_4091738-4092925 41.1 3.8e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000511_4353 1/1 293 360 .. 1 87 [] 89.2 8.9e-25
CP000511_2258 1/1 267 334 .. 1 87 [] 80.2 3.3e-22
CP000511_0871 1/1 103 169 .. 1 87 [] 72.9 3.8e-20
CP000511_1725 1/1 291 358 .. 1 87 [] 71.9 7.1e-20
CP000511_5094 1/1 262 326 .. 1 87 [] 70.9 1.4e-19
CP000511_4684 1/1 626 694 .. 1 87 [] 64.7 7.7e-18
CP000511_0817 1/1 158 224 .. 1 87 [] 62.6 3.1e-17
CP000511_4765 1/1 247 319 .. 1 87 [] 61.7 5.4e-17
CP000511_2298 1/1 254 320 .. 1 87 [] 56.7 1.5e-15
CP000511_1900 1/1 349 415 .. 1 87 [] 55.9 2.5e-15
CP000511_2082 1/1 236 302 .. 1 87 [] 50.9 6.6e-14
CP000511_3611 1/1 153 217 .. 1 87 [] 48.6 3e-13
CP000511_4931 1/1 230 296 .. 1 87 [] 48.2 3.7e-13
CP000511_1804 1/1 156 220 .. 1 87 [] 47.2 7.4e-13
CP000511_0191 1/1 225 291 .. 1 87 [] 44.7 3.8e-12
CP000511_2942 1/1 289 357 .. 1 87 [] 44.2 5.2e-12
CP000511_3770 1/1 169 235 .. 1 87 [] 41.1 3.8e-11

Alignments of top-scoring domains:
CP000511_4353: domain 1 of 1, from 293 to 360: score 89.2, E = 8.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL+aIrgy+el+++++ + l+e+
CP000511_4 293 RVRQFVADASHELRTPLAAIRGYTELAQRKQ-------AQLPEDV-- 330

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++e+er+ +L++d+L l+r+++g
CP000511_4 331 ----------AHAMNRVESETERMTQLVEDMLLLARLDSG 360

CP000511_2258: domain 1 of 1, from 267 to 334: score 80.2, E = 3.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPL+aI gyael + ++ + l+ +
CP000511_2 267 RMRQFITDASHELRTPLAAIHGYAELTRQDS-------SVLPQTT-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+ ea+r+ +L+ dlL l+r+++g
CP000511_2 305 ----------EYSLARIEAEAQRMHALVADLLLLARLDEG 334

CP000511_0871: domain 1 of 1, from 103 to 169: score 72.9, E = 3.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a +sH+LRTPL++Ir+++e++ + + +++++
CP000511_0 103 SRRRLVAFVSHDLRTPLAGIRALSEAIAD---------GVVPDDEI- 139

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + i++e+ rl+++++dl ++s+i ag
CP000511_0 140 ----------RVSAKHIEHESIRLSEMVDDLFEMSKINAG 169

CP000511_1725: domain 1 of 1, from 291 to 358: score 71.9, E = 7.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+l+ + + ++l++
CP000511_1 291 LQRRFTSDVSHELRTPLTTVRMAADLIHD-------HAEDLDPAL-- 328

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e + +e++r ++L+ndlL++sr +ag
CP000511_1 329 ----------RRSTELMVNELDRFESLLNDLLEISRHDAG 358

CP000511_5094: domain 1 of 1, from 262 to 326: score 70.9, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPLt+Irg+ael + ++ +++ e +
CP000511_5 262 RMRRFITDASHELRTPLTTIRGFAELYRQGA--------ARDVEML- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i++e++r+ L++dlL l+r++a+
CP000511_5 300 -------------MSRIESESRRMGLLVEDLLLLARLDAQ 326

CP000511_4684: domain 1 of 1, from 626 to 694: score 64.7, E = 7.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL+a +++++ L+ +d s+e++
CP000511_4 626 LRRSLLSAVSHDLRTPLAAAKAAVSSLRS-------EDVGFSPEDT- 664

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l t+++++++l+ L+ +lLd sr+ ag
CP000511_4 665 ----------AELLATVEESIDQLSGLVGNLLDSSRLAAG 694

CP000511_0817: domain 1 of 1, from 158 to 224: score 62.6, E = 3.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a+ +ae+ l+ ++ +++++
CP000511_0 158 TRRDFVANVSHELKTPVGAMGVLAEAVLA---------SADDPDTV- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e++ e++rl +++ +l +lsr++
CP000511_0 195 ----------RHFAEKMVTESNRLANMVGELIELSRLQGA 224

CP000511_4765: domain 1 of 1, from 247 to 319: score 61.7, E = 5.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++ ++ HELRTPLt++r+++elL e + +g + +ee++
CP000511_4 247 RQARLVTDAGHELRTPLTSLRTNVELLMESMK---PGAPRIPEEDM- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ ++ ++e ++ L+ dl dl+r +ag
CP000511_4 290 ----------AELRTDVIAQIEEMSTLVGDLVDLTRDDAG 319

CP000511_2298: domain 1 of 1, from 254 to 320: score 56.7, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+an sHELRTPLt I+g +el + ++ ++
CP000511_2 254 ELREFIANTSHELRTPLTKIQGWSELYFQ---------RPPTAVHT- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i +e +r++++i+ l l+r+++
CP000511_2 291 ----------DRAMQSIVEECDRMRAMIDGLSMLARAQEI 320

CP000511_1900: domain 1 of 1, from 349 to 415: score 55.9, E = 2.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++n+sHE+RTPLt I+ ++ L++ + +e+
CP000511_1 349 VKTTFFSNISHEFRTPLTLILDPVSELRR--------AESIDEPV-- 385

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+++ r + rl +L+n lLd+srieag
CP000511_1 386 ----------RRELDVVWRNGLRLTKLVNTLLDFSRIEAG 415

CP000511_2082: domain 1 of 1, from 236 to 302: score 50.9, E = 6.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f++ +sHELRTPLta+r+++e+L + +l +eqr
CP000511_2 236 TARDFASVASHELRTPLTAMRTNLEVLST---------LDLAPEQR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++r r+++ + l l++ +
CP000511_2 273 ----------QEVIGDVIRTQSRIEATLTALERLAQGQLT 302

CP000511_3611: domain 1 of 1, from 153 to 217: score 48.6, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ +l+HE+RTP++++++y+e+ ++++ +l++e+
CP000511_3 153 TRRQLFGDLAHEIRTPVSVLKAYIEAVEDGV-------KTLDPET-- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++a rl r +d+ l+++e+g
CP000511_3 191 -------------VAVLNDQASRLVRFSDDFAALAQAEEG 217

CP000511_4931: domain 1 of 1, from 230 to 296: score 48.2, E = 3.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f++ +HELRTPLta+r+++e+L + +lsee r
CP000511_4 230 SARDFASVSAHELRTPLTAMRTNVEVLAT---------LDLSEEGR- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ ++r r+++ + l l++ e
CP000511_4 267 ----------KEVVNDVIRTQSRIEATLGALERLAQGELS 296

CP000511_1804: domain 1 of 1, from 156 to 220: score 47.2, E = 7.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++l+HE+RTP++++ +y+e+L++++ +l++++
CP000511_1 156 TRQRLFSDLAHEIRTPVAVLEAYIEALEDGV-------RTLTPQT-- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++rl r +d+ l+++e+
CP000511_1 194 -------------AAMLRDQTRRLVRFSDDVAALAKAEES 220

CP000511_0191: domain 1 of 1, from 225 to 291: score 44.7, E = 3.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+an++HELRTPLta+r+ +++L+ ++l++++r
CP000511_0 225 AAQDFAANAAHELRTPLTAMRADLDTLRI---------HNLPDDER- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + + r+ +r + +i l +l+ +
CP000511_0 262 ----------EEVVADLSRAQRRVEGIITALGQLASGQLA 291

CP000511_2942: domain 1 of 1, from 289 to 357: score 44.2, E = 5.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL + +++lL++++ +++ +e
CP000511_2 289 ELEQFAYVASHDLQEPLRKVASFCQLLEKRY-------GDQLDERG- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+ + + a+r++ LindlL++sr +
CP000511_2 328 ----------VEYIGFAVDGAKRMQILINDLLTFSRVGRL 357

CP000511_3770: domain 1 of 1, from 169 to 235: score 41.1, E = 3.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPL+ r+++e++le d+e e +
CP000511_3 169 SQRRFVANASHELRTPLAINRTLIEVALE--------DPEVAEST-- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +t+l+ r +rLi+ lL l+ +++
CP000511_3 206 ----------RTLGRTLLDVNLRNERLIDGLLVLASSDQQ 235


Histogram of all scores:
score obs exp (one = represents 22 sequences)
----- --- ---
-15 2 0|=
-14 6 0|=
-13 59 4|*==
-12 258 136|======*=====
-11 530 708|========================= *
-10 1025 1314|=============================================== *
-9 1270 1357|==========================================================*
-8 1083 1016|==============================================*===
-7 730 640|=============================*====
-6 437 368|================*===
-5 250 202|=========*==
-4 143 108|====*==
-3 67 57|==*=
-2 31 29|=*
-1 35 15|*=
0 13 8|*
1 9 4|*
2 6 2|*
3 3 1|*
> 4 22 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 302.6220
P(chi-square) = 0

Total sequences searched: 5979

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: