Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Mycobacterium vanbaalenii PYR-1  

Data for CP000511  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000511.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000511_1752 CDS_1891870-1893360 121.6 3.1e-34 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000511_1752 1/1 294 376 .. 1 94 [] 121.6 3.1e-34

Alignments of top-scoring domains:
CP000511_1752: domain 1 of 1, from 294 to 376: score 121.6, E = 3.1e-34
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar++ ++e +eaL+Es++RV S
CP000511_1 294 EIHHRVKNNLQTVAALLRLQARRTNNPEG-----REALMESVRRVSS 335

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+H+ L++s d + v++++++++++ + + ++v+s ++ +
CP000511_1 336 IALVHDALSMSVD-EEVNLDQVIDRILPIMNDVAAVDSP---IR--I 376


Histogram of all scores:
score obs exp (one = represents 29 sequences)
----- --- ---
-15 2 0|=
-14 35 0|==
-13 95 37|=*==
-12 360 392|=============*
-11 1684 1093|=====================================*=====================
-10 1383 1415|================================================*
-9 912 1195|================================ *
-8 702 801|========================= *
-7 330 476|============ *
-6 264 265|=========*
-5 99 142|====*
-4 51 75|==*
-3 32 39|=*
-2 11 20|*
-1 10 10|*
0 2 5|*
1 3 2|*
2 2 1|*
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 562.8755
P(chi-square) = 0

Total sequences searched: 5979

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: