Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Dichelobacter nodosus VCS1703A  

Data for CP000513  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000513.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000513_0779 CDS_862455-861220 57.2 2.2e-16 1
CP000513_0150 CDS_165067-167172 49.7 3e-14 1
CP000513_0408 CDS_472211-473956 44.1 1.2e-12 1
CP000513_0852 CDS_942373-941015 34.5 6.2e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000513_0779 1/1 181 246 .. 1 87 [] 57.2 2.2e-16
CP000513_0150 1/1 483 556 .. 1 87 [] 49.7 3e-14
CP000513_0408 1/1 356 421 .. 1 87 [] 44.1 1.2e-12
CP000513_0852 1/1 219 286 .. 1 87 [] 34.5 6.2e-10

Alignments of top-scoring domains:
CP000513_0779: domain 1 of 1, from 181 to 246: score 57.2, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ n+sHEL+TP+t+Irg++elL + ++l+e
CP000513_0 181 KRKAFIDNASHELKTPITVIRGFLELLSA---------QNLPEYM-- 216

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++er+ L++d+L l+ +e+
CP000513_0 217 ----------QVPMREMVKQIERMHGLVQDMLKLASLEEV 246

CP000513_0150: domain 1 of 1, from 483 to 556: score 49.7, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt Ir+ +e L+++l ++l++e +
CP000513_0 483 AWEEVARRLAHEIKNPLTPIRLQTERLQRKLT------DKLTDEYDR 523

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
L ++++eti+++++ +l+L++d+ ++++ +
CP000513_0 524 HIL-------QRATETIINQVDAMLQLVSDFSQYAKPIEL 556

CP000513_0408: domain 1 of 1, from 356 to 421: score 44.1, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+PL +++ + el++e ++++
CP000513_0 356 ALGRLTASIAHEIRNPLGSVLSANELIKE---------QTQDTMI-- 391

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i + ++r++ +i+++L + +
CP000513_0 392 ----------LYLAEKITNNGQRMNVIIDNILSMFSQKTA 421

CP000513_0852: domain 1 of 1, from 219 to 286: score 34.5, E = 6.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ + n++H+LR PL+ +r e++l d+++s ++
CP000513_0 219 SQRQVTNNIAHDLRSPLNRLRSRMEVALL--------DEHRSNAEL- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ + +a+ ll+ n lL +++ e+
CP000513_0 257 ----------REVISQSIVDAQGLLQTFNSLLNIAQVESR 286


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 6 0|==
-13 12 0|===
-12 53 29|=====*=====
-11 117 151|======================== *
-10 199 281|======================================== *
-9 267 290|====================================================== *
-8 205 217|========================================= *
-7 182 137|===========================*=========
-6 88 78|===============*==
-5 59 43|========*===
-4 46 23|====*=====
-3 24 12|==*==
-2 5 6|=*
-1 4 3|*
0 4 1|*
1 2 0|=
> 2 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 109.5403
P(chi-square) = 6.605e-19

Total sequences searched: 1280

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: