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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

3 accessions found for Mycobacterium sp. KMS  

Data for CP000518  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000518.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000518_0599 CDS_656305-657285 76.5 4e-22 1
CP000518_3955 CDS_4197167-4198474 69.3 5.1e-20 1
CP000518_1066 CDS_1157260-1156055 65.2 8.5e-19 1
CP000518_4173 CDS_4428633-4426927 47.1 1.8e-13 1
CP000518_1088 CDS_1178243-1179943 41.0 1.2e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000518_0599 1/1 130 194 .. 1 70 [] 76.5 4e-22
CP000518_3955 1/1 237 304 .. 1 70 [] 69.3 5.1e-20
CP000518_1066 1/1 197 263 .. 1 70 [] 65.2 8.5e-19
CP000518_4173 1/1 378 443 .. 1 70 [] 47.1 1.8e-13
CP000518_1088 1/1 376 441 .. 1 70 [] 41.0 1.2e-11

Alignments of top-scoring domains:
CP000518_0599: domain 1 of 1, from 130 to 194: score 76.5, E = 4e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARELHD++gQ+L+++ l l +a d++p+e+r +l+e
CP000518_0 130 ERQRIARELHDEIGQTLTVALLTLKRAV-----DRAPAEIRGELEET 171

relarealaevRrllgdLRpaal<-*
+e++r +l+evR ++++LRp+al
CP000518_0 172 QETVRASLDEVRGIARRLRPDAL 194

CP000518_3955: domain 1 of 1, from 237 to 304: score 69.3, E = 5.1e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI R+LHDsv +L ++++ ++la++ l d+d ++a++ ++e+
CP000518_3 237 ERHRIERDLHDSVQPRLVSLAMAIGLAQTKL--DSDLPAAKQLIAEA 281

relarealaevRrllgdLRpaal<-*
++ a+ al e+R++++++ p++l
CP000518_3 282 HDEAKNALVELRNVVRGIAPTIL 304

CP000518_1066: domain 1 of 1, from 197 to 263: score 65.2, E = 8.5e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+A ++HD+++Q+L ++ l++a r++ dpe + e+l +
CP000518_1 197 ERRRLAGDIHDGISQRLVTLSYRLDAAVRAI---GDPEVVSEQLGKA 240

relarealaevRrllgdLRpaal<-*
rel+ +l e+R+++++LRp++l
CP000518_1 241 RELVALTLGEARAAISGLRPPVL 263

CP000518_4173: domain 1 of 1, from 378 to 443: score 47.1, E = 1.8e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R RIAR+LHD v Q+L+a+ l l++ ++++ +++ ++++l+
CP000518_4 378 DRDRIARDLHDHVIQRLFAVGLSLQGTLARV--RDA--DVQQRLAGN 420

relarealaevRrllgdLRpaal<-*
+ ++ ++e+R ++ dL+ +
CP000518_4 421 VDDLQAVIQEIRTTIFDLHGGSS 443

CP000518_1088: domain 1 of 1, from 376 to 441: score 41.0, E = 1.2e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R RIAR+LHD v Q+L+++ l l++ ++ +++ ++++l e
CP000518_1 376 DRDRIARDLHDQVIQRLFGVGLTLQGTIPRA--RTP--DVQRRLIES 418

relarealaevRrllgdLRpaal<-*
+ ++e ++++R ++ dL+ +
CP000518_1 419 VDDLQEVIQQIRTAIFDLQGGSS 441


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 8 0|=
-13 34 0|===
-12 109 60|===*====
-11 145 500|========== *
-10 517 1161|=================================== *
-9 809 1318|====================================================== *
-8 855 1016|========================================================= *
-7 823 638|==========================================*============
-6 664 361|========================*====================
-5 627 193|============*=============================
-4 346 101|======*=================
-3 206 52|===*==========
-2 131 26|=*=======
-1 73 13|*====
0 39 6|*==
1 29 3|*=
2 17 1|*=
3 7 0|=
4 6 0|=
5 4 0|=
6 3 0|=
7 1 0|=
8 1 0|=
9 0 0|
10 0 0|
> 11 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 4010.2612
P(chi-square) = 0

Total sequences searched: 5460

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: