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Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Bartonella bacilliformis KC583  

Data for CP000524  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000524.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000524_0417 CDS_443178-440857 89.5 1.6e-25 1
CP000524_1262 CDS_1418610-1421084 83.9 6e-24 1
CP000524_1242 CDS_1386146-1387969 71.1 2.7e-20 1
CP000524_0415 CDS_439159-440541 50.0 2.5e-14 1
CP000524_0518 CDS_551962-554190 47.0 1.8e-13 1
CP000524_0801 CDS_875908-873371 42.4 3.4e-12 1
CP000524_0929 CDS_1027767-1029107 32.7 2e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000524_0417 1/1 546 615 .. 1 87 [] 89.5 1.6e-25
CP000524_1262 1/1 595 663 .. 1 87 [] 83.9 6e-24
CP000524_1242 1/1 358 423 .. 1 87 [] 71.1 2.7e-20
CP000524_0415 1/1 240 306 .. 1 87 [] 50.0 2.5e-14
CP000524_0518 1/1 509 580 .. 1 87 [] 47.0 1.8e-13
CP000524_0801 1/1 469 535 .. 1 87 [] 42.4 3.4e-12
CP000524_0929 1/1 243 301 .. 1 87 [] 32.7 2e-09

Alignments of top-scoring domains:
CP000524_0417: domain 1 of 1, from 546 to 615: score 89.5, E = 1.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g+++++l + ++l+++
CP000524_0 546 AKSEFLANISHELRTPLNAILGFSDIMLQSTF------GPLGSQR-- 584

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i++++ +ll Lind+Ld+s+ieag
CP000524_0 585 ---------YEEYMRDIHNSGTHLLTLINDILDMSKIEAG 615

CP000524_1262: domain 1 of 1, from 595 to 663: score 83.9, E = 6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ ++s ELRTPLt I+g++++L+++++ + l+e q
CP000524_1 595 LRNEFVQHVSYELRTPLTNIIGFSDILRDQMF------GSLNERQ-- 633

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl i++e++ ll+L+nd+Ldl+ ++ag
CP000524_1 634 ----------HEYLGHIQSESNTLLNLVNDILDLATLDAG 663

CP000524_1242: domain 1 of 1, from 358 to 423: score 71.1, E = 2.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHEL++PLt++r ++e+L +++ e++
CP000524_1 358 AIERFAADVSHELKNPLTSLRSAVETLPL----------TKNKETQ- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rLi d+ d sr++a+
CP000524_1 394 ----------EKLLKIIQHDIRRLDRLITDISDASRLDAE 423

CP000524_0415: domain 1 of 1, from 240 to 306: score 50.0, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ n++H+L+TPL +r ae +l ++++e +
CP000524_0 240 GLRQVSDNIAHDLKTPLMRLRNRAEEALS---------GKKTELE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++l+ ++ e+++l r n +L +sriea
CP000524_0 276 ---------YRQALDDVIAESDQLIRTFNAILMISRIEAT 306

CP000524_0518: domain 1 of 1, from 509 to 580: score 47.0, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++dk + + ++
CP000524_0 509 AWADVARRIAHEMKNPLTPIQLSAERIRRRYDK-----MVAQDREV- 549

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti r++ + r+++++ ++r+ ++
CP000524_0 550 ---------FDRCIDTIVRQVGDIGRMVDEFSSFARMPEP 580

CP000524_0801: domain 1 of 1, from 469 to 535: score 42.4, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI++ ++lLl+ + s++
CP000524_0 469 AVGQLAGGIAHDFNNVLTAILMSCDLLLN--------THRVSDPA-- 505

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i++ a+r +L+++lL +sr ++
CP000524_0 506 ----------HADLTNIKNNANRAAALVQQLLAFSRKQTL 535

CP000524_0929: domain 1 of 1, from 243 to 301: score 32.7, E = 2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRT Lt ++ + ++ +++d
CP000524_0 243 QRTMMLSGVSHDLRTILTRFKLQLAIASTDFD--------------- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++ ++++++d L ++r e
CP000524_0 275 -------------SSLLEQDVNDMQNMLEDYLAFARGEGS 301


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 2 0|=
-14 15 0|====
-13 61 0|================
-12 84 29|=======*=============
-11 121 152|=============================== *
-10 211 282|===================================================== *
-9 222 291|======================================================== *
-8 196 218|================================================= *
-7 148 137|==================================*==
-6 90 79|===================*===
-5 50 43|==========*==
-4 31 23|=====*==
-3 14 12|==*=
-2 11 6|=*=
-1 8 3|*=
0 5 1|*=
1 2 0|=
> 2 12 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 154.3827
P(chi-square) = 4.667e-28

Total sequences searched: 1283

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: