Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Bartonella bacilliformis KC583  

Data for CP000524  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000524.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000524_0248 CDS_247061-248503 58.0 8e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000524_0248 1/1 265 335 .. 1 76 [. 58.0 8e-17

Alignments of top-scoring domains:
CP000524_0248: domain 1 of 1, from 265 to 335: score 58.0, E = 8e-17
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
HR+ N+L ++SSLL LQ ++++eev + +L +++RV++
CP000524_0 265 DASHRIGNSLSIVSSLLALQMNRSQNEEV-----RSILGAARDRVQT 306

mAliHEeLYksedldtvdfseYlekLten<-*
+++ +++L ++d++t ++++l+ ++++
CP000524_0 307 ISTAYRRLRLNDDMETTLLADFLNSVVHD 335


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 3 0|=
-14 12 0|===
-13 35 8|=*=====
-12 83 84|================*
-11 280 234|==============================================*=========
-10 247 303|================================================== *
-9 218 256|============================================ *
-8 162 172|================================= *
-7 94 102|=================== *
-6 76 56|===========*====
-5 30 30|=====*
-4 22 16|===*=
-3 9 8|=*
-2 4 4|*
-1 4 2|*
> 0 4 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 125.3973
P(chi-square) = 4.048e-22

Total sequences searched: 1283

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: