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Classification of phyla is from NCBI page
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2 accessions found for Burkholderia mallei SAVP1  

Data for CP000525  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000525.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000525_0977 CDS_1010692-1008377 75.9 1.6e-21 1
CP000525_0004 CDS_9378-7984 67.8 3.1e-19 1
CP000525_0462 CDS_488502-486037 46.5 3.2e-13 1
CP000525_0545 CDS_566352-564991 45.3 7.5e-13 1
CP000525_1690 CDS_1686401-1687570 38.0 8.6e-11 2
CP000525_1207 CDS_1233731-1234663 31.6 5.6e-09 1
CP000525_1443 CDS_1445574-1444795 29.0 3.1e-08 1
CP000525_1370 CDS_1376993-1378090 28.0 5.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000525_0977 1/1 394 459 .. 1 87 [] 75.9 1.6e-21
CP000525_0004 1/1 242 308 .. 1 87 [] 67.8 3.1e-19
CP000525_0462 1/1 588 656 .. 1 87 [] 46.5 3.2e-13
CP000525_0545 1/1 230 295 .. 1 87 [] 45.3 7.5e-13
CP000525_1207 1/1 74 142 .. 1 87 [] 31.6 5.6e-09
CP000525_1443 1/1 27 94 .. 1 87 [] 29.0 3.1e-08
CP000525_1370 1/1 144 207 .. 1 87 [] 28.0 5.7e-08

Alignments of top-scoring domains:
CP000525_0977: domain 1 of 1, from 394 to 459: score 75.9, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ + ++ q
CP000525_0 394 LKDELLATVSHELRTPLNVIYGWIEVLRN---------PVDGALQ-- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l+r++ d+Ld s + +g
CP000525_0 430 ----------QQAIDAIDRSARSLSRMVGDILDASSLATG 459

CP000525_0004: domain 1 of 1, from 242 to 308: score 67.8, E = 3.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +nl+H++RTPLt +++ a+++l ++++++
CP000525_0 242 RLSQFSSNLAHDMRTPLTNLLAEAQVALS---------KPRTADE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ +e+ ++e +rl+r+i+d+L l+r ++
CP000525_0 278 ---------YRDVIESSIDEYQRLSRMIEDMLFLARSDNA 308

CP000525_0462: domain 1 of 1, from 588 to 656: score 46.5, E = 3.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL a+ g ++lL++++ + l++
CP000525_0 588 DLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQ------GQLDARA-- 626

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ + + a r+++Li+dlL +sr +
CP000525_0 627 ----------DEFIGHAVDGATRMQSLIDDLLSYSRVGRL 656

CP000525_0545: domain 1 of 1, from 230 to 295: score 45.3, E = 7.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTP++a ++ ++ L + e+++e +
CP000525_0 230 AERSFAANSAHELRTPIAAALAQTQRLIA----------EAPAEPL- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++++ +++ l+r ++l++l+++e g
CP000525_0 266 ----------RERARRVEGALHTLSRVSEQLMQLAKAEDG 295

CP000525_1207: domain 1 of 1, from 74 to 142: score 31.6, E = 5.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+aI+++++ + + + +s++
CP000525_1 74 ALGQMAAGITHELNQPLAAIMTLSSNAVRMAA------LGRSADL-- 112

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le + + a r+ +++ + ++r e+
CP000525_1 113 ----------TRNLELVNDLAGRMGKIVAHMKGFARHESV 142

CP000525_1443: domain 1 of 1, from 27 to 94: score 29.0, E = 3.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l+ +sH+LR PL+a+ a +L++ + ++s+e +
CP000525_1 27 VRDHALSVASHDLRSPLNAMHSWAYVLER--------RLTASDENL- 64

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i+ +e+ +L++ d r+e+
CP000525_1 65 ----------ARALDGIRIGIEQQTKLLETTIDAPRAETR 94

CP000525_1370: domain 1 of 1, from 144 to 207: score 28.0, E = 5.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e l lsH++RTP t+I++++++ ++ ++ + +
CP000525_1 144 QRDEVLDFLSHDMRTPQTSILALLDVYRN---------EHGAMPPI- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ a+r l+L + + l+r++++
CP000525_1 181 -------------LERIETHARRALALADGFIHLTRAQSE 207


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 3 0|=
-14 14 0|===
-13 45 1|*=======
-12 122 39|======*==============
-11 193 205|================================= *
-10 292 381|================================================= *
-9 335 393|======================================================== *
-8 256 294|=========================================== *
-7 207 185|==============================*====
-6 107 106|=================*
-5 78 58|=========*===
-4 32 31|=====*
-3 13 16|==*
-2 12 8|=*
-1 7 4|*=
0 3 2|*
> 1 15 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 217.5883
P(chi-square) = 6.468e-311

Total sequences searched: 1734

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: