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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

2 accessions found for Burkholderia mallei SAVP1  

Data for CP000525  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000525.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000525_1076 CDS_1105262-1106662 65.4 2.4e-19 1
CP000525_0460 CDS_485584-484106 54.6 3.5e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000525_1076 1/1 253 323 .. 1 70 [] 65.4 2.4e-19
CP000525_0460 1/1 285 353 .. 1 70 [] 54.6 3.5e-16

Alignments of top-scoring domains:
CP000525_1076: domain 1 of 1, from 253 to 323: score 65.4, E = 2.4e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe...eareal
ERaR+ARELHD+++Q++ ++kl+ e a+ +l + p+++++a++al
CP000525_1 253 ERARLARELHDGISQMMVSAKLMCESALERL--AHLPArenAAQAAL 297

deirelarealaevRrllgdLRpaal<-*
+ + ++l+evRr+ ++LRp+ l
CP000525_1 298 SKGIARLGDTLREVRRISHALRPTML 323

CP000525_0460: domain 1 of 1, from 285 to 353: score 54.6, E = 3.5e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
E +RIARELHD +gQ+L+a+k+ + l+ l kd++ +l
CP000525_0 285 EKTRIARELHDDLGQQLTALKMAVTLVDNEL---KDAGwaSRTSRLP 328

eirelarealaevRrllgdLRpaal<-*
++ +l+ + l+ vRr++ dLRp l
CP000525_0 329 NVYALIGQLLDSVRRIAADLRPVML 353


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 11 0|===
-13 32 0|=======
-12 88 19|===*==============
-11 91 158|=================== *
-10 207 368|========================================== *
-9 285 418|========================================================= *
-8 227 322|============================================== *
-7 218 202|========================================*===
-6 146 114|======================*=======
-5 179 61|============*=======================
-4 82 32|======*==========
-3 64 16|===*=========
-2 33 8|=*=====
-1 28 4|*=====
0 11 2|*==
1 10 1|*=
2 4 0|=
3 3 0|=
4 3 0|=
5 1 0|=
6 6 0|==
7 0 0|
8 1 0|=
9 0 0|
> 10 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 932.5408
P(chi-square) = 0

Total sequences searched: 1734

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: