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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

2 accessions found for Burkholderia mallei SAVP1  

Data for CP000526  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000526.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000526_2200 CDS_2234741-2236663 59.4 2.7e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000526_2200 1/1 439 507 .. 1 70 [] 59.4 2.7e-17

Alignments of top-scoring domains:
CP000526_2200: domain 1 of 1, from 439 to 507: score 59.4, E = 2.7e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+ A+ LHDs++QsL ++lq+++++ ++ + d+ are + +
CP000526_2 439 ERNLVAQGLHDSIAQSLNFVNLQTQMLADAI--AHDNLaDAREIVPM 483

irelarealaevRrllgdLRpaal<-*
+++ +++++a+vR+ll ++R+
CP000526_2 484 LKHGVEQGYADVRELLLNFRTRLT 507


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-16 1 0|=
-15 0 0|
-14 15 0|==
-13 55 0|=====
-12 180 38|===*=============
-11 151 316|============== *
-10 383 734|=================================== *
-9 598 834|======================================================= *
-8 468 643|=========================================== *
-7 412 404|====================================*=
-6 338 228|====================*==========
-5 378 122|===========*=======================
-4 168 64|=====*==========
-3 120 32|==*========
-2 68 16|=*=====
-1 39 8|*===
0 22 4|*=
1 20 2|*=
2 19 1|*=
3 8 0|=
4 2 0|=
5 3 0|=
6 1 0|=
7 2 0|=
8 2 0|=
9 0 0|
> 10 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2133.2012
P(chi-square) = 0

Total sequences searched: 3455

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: